BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3657.p (436 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094613|ref|YP_001099688.1| putative sugar transport protei... 145 5e-36 gi|134096160|ref|YP_001101235.1| MFS family transporter [Hermini... 135 5e-33 gi|134095871|ref|YP_001100946.1| putative transporter protein [H... 96 4e-21 >gi|134094613|ref|YP_001099688.1| putative sugar transport protein [Herminiimonas arsenicoxydans] Length = 554 Score = 145 bits (365), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 9/225 (4%) Query: 19 LTSSDYRTLGLSALGGTLEFYDFVIYVFFAAVVGKLFFPADMPEWLRMLQTFGIFAAGYL 78 +T+ + + + S+LG E+YDF +Y AA++ K FF P + FAAG+L Sbjct: 12 ITAEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFALLA-FAAGFL 70 Query: 79 ARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILLLLMRTLQ 138 RP G I+ GD+IGRK F ++I +M T V+GLLP YASIG+AAP++L+++R LQ Sbjct: 71 VRPFGAIVFGRLGDMIGRKYTFLVTIVIMGGSTFVVGLLPNYASIGLAAPVILIILRILQ 130 Query: 139 GAAIGGEMPGAWVFVAEHVPANRYSFGVGSLTAGITGGILLGSLMGIFI----NSVYQPA 194 G A+GGE GA +VAEH P + G+ T+ I +G M + + + Sbjct: 131 GLALGGEYGGAATYVAEHAPHGKR----GAFTSWIQTTATMGLFMSLLVILGTRTAMGEE 186 Query: 195 EVAAYAWRIPFLLGGVFGLVSVYLRRYLEETPVFRELAARRKQSH 239 A + WRIPFL+ +SV++R + E+P F ++ A K S Sbjct: 187 AFADWGWRIPFLVSVFLLGISVWIRLSMAESPAFVKMKAEGKTSK 231 >gi|134096160|ref|YP_001101235.1| MFS family transporter [Herminiimonas arsenicoxydans] Length = 429 Score = 135 bits (339), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 124/394 (31%), Positives = 188/394 (47%), Gaps = 34/394 (8%) Query: 30 SALGGTLEFYDFVIYVFFAAVV-GKLFFPADMPEWLRMLQTFGIFAAGYLARPVGGIIIA 88 S +G T+EF+DF IY A +V LFFP+ P MLQ+ FA + ARP+G + Sbjct: 21 SLIGTTIEFFDFYIYATAAVLVFPTLFFPSSSPT-AAMLQSLATFAIAFFARPIGSAVFG 79 Query: 89 HYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILLLLMRTLQGAAIGGEMPG 148 HYGD IGRK ++ M + T+ IGLLPTYA+IG AP+LL L R QG +GGE G Sbjct: 80 HYGDRIGRKATLVAALLTMGISTVAIGLLPTYAAIGTFAPLLLALCRFGQGLGLGGEWGG 139 Query: 149 AWVFVAEHVPANRYSFGVGSLTAGITGGILLGSLMGIFINSVYQPAEVAAYAWRIPFLLG 208 A + E+ P + ++ G G L + + + V + +Y WRIPFL Sbjct: 140 AVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLGEVLTNEQFFSYGWRIPFLAS 199 Query: 209 GVFGLVSVYLRRYLEETPVFRELAARRKQSHELPLKTVLREHRGASLLTAGMTWCLSGAV 268 V LV +Y+R + ETP F+++ + ++ ++PL TV EH +L G L+ V Sbjct: 200 AVLVLVGLYVRLKITETPAFQKVLDKGERV-KIPLATVFSEH--GRMLVLGTIIALATFV 256 Query: 269 VVVILMTPSYLQTVHHLP-----------AKLVMQANCAGTLMLTIGCLLIGWLCDRIGT 317 + YL TV L L++Q LTI + L D+ G Sbjct: 257 LF-------YLMTVFALSWGTTALGYSRQQFLILQLFAVIFFALTIP--VSALLADKYGR 307 Query: 318 RASMI-----LGWGGLGLSSWWFYGQLPGSPESLIWGYALVGLFVGSIALTPIVSTRAFP 372 R +MI + G+ ++ + + L G AL+G+ G + + + FP Sbjct: 308 RITMIVISVAMMLFGVLIAPMFVANSIISVAIFLSLGLALMGMTYGPLG---TMLSELFP 364 Query: 373 PPVRFTGLSFAYNMAYAIFGGLTPVLISLWIKAD 406 +R+TG+S +N+ IFG + W+ + Sbjct: 365 AEIRYTGVSLTFNLG-GIFGASLAPYAATWLATN 397 >gi|134095871|ref|YP_001100946.1| putative transporter protein [Herminiimonas arsenicoxydans] Length = 449 Score = 95.5 bits (236), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 103/386 (26%), Positives = 180/386 (46%), Gaps = 23/386 (5%) Query: 32 LGGTLEFYDFVIYVFFAAVV-GKLFFP-ADMPEWLRMLQTFGIFAAGYLARPVGGIIIAH 89 +G E++DF +Y + +V +FFP A E L F IF+ ++ARPVG +I Sbjct: 45 IGRASEYFDFFVYAIASVLVFPTVFFPFASKLEG--TLYAFTIFSFAFIARPVGTVIFME 102 Query: 90 YGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILLLLMRTLQGAAIGGEMPGA 149 R+ TL++FL+ T I LP++A +G A +LL L+R QG A+GG G Sbjct: 103 IQRRFSREAKLTLALFLLGGSTAGIAFLPSHAQLGTTAIVLLALLRCGQGVALGGSWDGL 162 Query: 150 WVFVAEHVPANR---YSFGVGSLTAGITGGILLGSLMGIFINSVYQPAEVAAYAWRIPFL 206 +A + P N+ Y+ +G L A I G +L + + ++ P + + WR PF Sbjct: 163 PSLLALNAPQNKRGWYAM-LGQLGAPI--GFILAAGLFAYMLYTLAPQDFFEWGWRYPFF 219 Query: 207 LGGVFGLVSVYLRRYLEETPVFRELAARRKQSHELPLKTV-LREHRGASLLTAGMTWCLS 265 + +V+++ R L TP + L R+ P V + +G +L+ + S Sbjct: 220 VAFAINVVALFARLRLVSTPEYSRLLDERELE---PANVVEITRSQGRNLIIGALAALAS 276 Query: 266 GAVVVVILMTP-SYLQTVHHLPAKLVMQANCAGTLMLTIGCLLIGWLCDRIGTRASMILG 324 A+ ++ + P S++ ++ G + + G + DR+G R ++ + Sbjct: 277 YALFHLVTVFPLSWIVLYSERSISQFLEIQMIGAGLAICSIIASGLIADRVGRRTTLAVL 336 Query: 325 WGGLGLSSWW----FYGQLPGSPESLIWGYALVGLFVGSIALTPIVSTRAFPPPVRFTGL 380 +G+ S + G + G +I G+ L+GL G A VS FP R+TG Sbjct: 337 AVLIGIFSAFVPMLMNGGIFGENLFIIVGFILLGLSYGQAA--GAVSAN-FPAKYRYTGA 393 Query: 381 SFAYNMAYAIFGGLTPVLISLWIKAD 406 + ++A+ + G P L++L + A+ Sbjct: 394 ALTSDLAWLVGAGFAP-LVALGLSAN 418 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.327 0.143 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 817,287 Number of extensions: 33542 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 3 Length of query: 436 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 352 Effective length of database: 723,567 Effective search space: 254695584 Effective search space used: 254695584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)