BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3656.p (523 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 466 e-132 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 397 e-112 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 378 e-106 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 370 e-104 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 357 e-100 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 466 bits (1198), Expect = e-132, Method: Compositional matrix adjust. Identities = 266/520 (51%), Positives = 362/520 (69%) Query: 1 MFANLTIKTRLITVIGFLLVISFLIGTTSLISLINVNNSLKTVYEDRLIALSQLDQVIRS 60 M N+TIK+ L+ V+G L ++ G L SL N +L++VYEDR + + QL+ VI Sbjct: 1 MLKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTVITL 60 Query: 61 SNKMQINIARALVSSQEELATHIASFKKEESVRDKVWKDYLATYLTPDEKALADTLVREQ 120 S Q+++A ++ + + + +K ++ + ++A+ LTP+ K LAD ++ Sbjct: 61 STINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLADKFAADR 120 Query: 121 KLLDEKGFAPALNALNGGDMKTVATLIHGDIARYATSITETMNALIQLQTEVAKSEYENS 180 K+ EK PA+ A GG++ V +++G + T + + ALI L+ AK +E S Sbjct: 121 KIFLEKALQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAALIDLELREAKKAFEES 180 Query: 181 QQRYQSFRSFSIAAIICSILVGSLIGLWLIRSINRPLNSAIEVAQRIASGDLTQSIEVGG 240 Q R+ R+ SI AII +L+ + WLIR I RPL+ A+++A+ +A+GDLTQ I V Sbjct: 181 QTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNS 240 Query: 241 TNEMGRLLRALQEMSKALTQAVTQVRHSTDSITTASAEIASGNLDLSSRTEEQAASLEQT 300 TNE G+LL+AL++M+ +L++ V+ VR T++IT AS EIASGN DLSSRTE QA SLE+T Sbjct: 241 TNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEET 300 Query: 301 ASSMEELTSTVKQNADNALQANVLMAQARKQAENGGGIVNQVVATMNDIKQSSSHMVDII 360 ASSMEELTSTV+QNADNA QAN L+ A + A GG +V++VV TM IK SS +VDII Sbjct: 301 ASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDII 360 Query: 361 TVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSASAAKEIRELIEASL 420 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEI+ LI+ S+ Sbjct: 361 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSV 420 Query: 421 QKISSGGNLVNDAGAVMEETVDSVKRVAQLMEDIAAASQEQSNGIDQVNLAIGQMDQVTQ 480 K+ +G LV+ AG+ M+E V SVK VA +M +I +ASQEQS+GI+QVN AI QMD++TQ Sbjct: 421 HKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQ 480 Query: 481 QNAALVEEAAAAASSLRDQAQILTGAVSVFKTEQSHHAMT 520 QNAALVE+AAAAA S++DQA L+GAV++FK + AM+ Sbjct: 481 QNAALVEQAAAAAQSMQDQAVELSGAVAIFKLDAGGSAMS 520 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 397 bits (1020), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/525 (48%), Positives = 345/525 (65%), Gaps = 13/525 (2%) Query: 1 MFANLTIKTRLITVIGFLLVISFLIGTTSLISLINVNNSLKTVYEDRLIALSQLDQVIRS 60 M N++IK RL+ + F+ ++ + G ++ + NN+L+ +Y +++ + + ++ Sbjct: 1 MLKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTR 60 Query: 61 SNKMQINIARALVSSQEELATHIASFKKEESVR---DKVWKDYLATYL-TPDEKALAD-- 114 + + + + EE + I K+ E+ ++ WK YL+ + T +E+ +AD Sbjct: 61 LLQARAGLNLVAMRPHEEGSERI--LKRAENFYLQSEEEWKKYLSLPIETLEERKVADEV 118 Query: 115 TLVREQKLLD-EKGFAPALNALNGGDMKTVATLIHGDIARYATSITETMNALIQLQTEVA 173 T R + L + E+G AL A G + V ++ + S+T++ + L++LQ + A Sbjct: 119 TAKRIRYLKEAEQGLIAALRA---GRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSA 175 Query: 174 KSEYENSQQRYQSFRSFSIAAIICSILVGSLIGLWLIRSINRPLNSAIEVAQRIASGDLT 233 + Y++SQ + FR ++ ++ ++ ++ +LIR+I PL + IASGDLT Sbjct: 176 ATGYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLT 235 Query: 234 QSIEVGGTNEMGRLLRALQEMSKALTQAVTQVRHSTDSITTASAEIASGNLDLSSRTEEQ 293 +IEV NEMG L+ LQ+M K LT V QVR + +I+TA+ EIA+GNLDLSSRTE+Q Sbjct: 236 SNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQ 295 Query: 294 AASLEQTASSMEELTSTVKQNADNALQANVLMAQARKQAENGGGIVNQVVATMNDIKQSS 353 AASLE+TASSMEELTSTVKQN DNA QAN L A A GG +V+ VV TM+ I S+ Sbjct: 296 AASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSA 355 Query: 354 SHMVDIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSASAAKEIR 413 +VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEI+ Sbjct: 356 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 415 Query: 414 ELIEASLQKISSGGNLVNDAGAVMEETVDSVKRVAQLMEDIAAASQEQSNGIDQVNLAIG 473 LI+ S+ K+ +G LV +AG M E VDSVKRV +M +I AASQEQS GI+QVN AI Sbjct: 416 HLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIV 475 Query: 474 QMDQVTQQNAALVEEAAAAASSLRDQAQILTGAVSVFKTEQSHHA 518 QMD+VTQQNAALVE+AAAAASSLRDQA L+ VSVFK Q H + Sbjct: 476 QMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKL-QGHQS 519 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 378 bits (971), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/522 (45%), Positives = 333/522 (63%), Gaps = 7/522 (1%) Query: 4 NLTIKTRLITVIGFLLVISFLIGTTSLISLINVNNSLKTVYEDRLIALSQLDQVIRSSNK 63 N+T+KTRL VIG L +IS +G L + N L+ VY+ R +AL ++ ++ R Sbjct: 2 NITLKTRLGLVIGLLALISMAVGLLGLNGIGRSNGDLQQVYQHRTVALEKISRIDRLLLA 61 Query: 64 MQINIARALVSSQ-EELATHIASFKKEESVRDKVWKDYLATYLTPDEKALADTLVREQKL 122 ++ ++ AL E+ A+H A K + + W +Y+ L PDE+ LA+ + Sbjct: 62 NRLALSEALHDPDAEKTASHTALIAKNAAEITQAWNEYMDGSLLPDERRLAENFASHRAR 121 Query: 123 LDEKGFAPALNALNGGDMKTVATLIHGDIARYATSITETMNALIQLQTEVAKSEYENSQQ 182 + + G PA AL G + A + + ++ +++AL +LQ + A YE +QQ Sbjct: 122 MVQDGLFPAAAALQKGQV-VEAMQLQQQFQKLVPAVRNSIDALRKLQVDEAGLAYEAAQQ 180 Query: 183 RYQSFRSFSIAAIICSILVGSLIGLWLIRSINRPLNS----AIEVAQRIASGDLTQSIEV 238 RY + R+ + + +L+G L+RS+ L A ++ +RIA GDL+ +I + Sbjct: 181 RYLTIRNVIATVLGAGAVAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLSATI-I 239 Query: 239 GGTNEMGRLLRALQEMSKALTQAVTQVRHSTDSITTASAEIASGNLDLSSRTEEQAASLE 298 + LL A+Q+M + L + V +R ++D+I TAS +IA+GN+DLS+RTE+QA+SLE Sbjct: 240 TRKGDRNSLLAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLE 299 Query: 299 QTASSMEELTSTVKQNADNALQANVLMAQARKQAENGGGIVNQVVATMNDIKQSSSHMVD 358 +TASSMEELT+TVKQNA +A QAN L A A G +V QVV TM+ I S+ + D Sbjct: 300 ETASSMEELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGD 359 Query: 359 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSASAAKEIRELIEA 418 II VI+GIAFQTNILALNAAVEAAR GEQGRGFAVVA+EVR LAQRSA AAKEI+ LI+ Sbjct: 360 IIGVINGIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDD 419 Query: 419 SLQKISSGGNLVNDAGAVMEETVDSVKRVAQLMEDIAAASQEQSNGIDQVNLAIGQMDQV 478 SL+K+ +G LV+ AG+ M E V S+ +V +M +I AS+EQ+ GI+QVN AIGQMD+V Sbjct: 420 SLEKVGAGATLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRV 479 Query: 479 TQQNAALVEEAAAAASSLRDQAQILTGAVSVFKTEQSHHAMT 520 TQQNAALVEEAAAAA SL++QA L VSVFK EQ+ T Sbjct: 480 TQQNAALVEEAAAAAGSLQEQACSLVQVVSVFKLEQAQSHRT 521 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 370 bits (951), Expect = e-104, Method: Compositional matrix adjust. Identities = 261/536 (48%), Positives = 332/536 (61%), Gaps = 54/536 (10%) Query: 2 FANLTIKTRLITVIGFLLVISFLIGTTSLISLINVNN--------SLKTVYEDRLIALSQ 53 F NL I RL G LLV+ + ++ L +V ++K + I + Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKGIE 62 Query: 54 LDQV-----IRSSNKMQINI--------ARALVSSQEELATHIASFKKEESVRDKVWKDY 100 + V +R+S+ Q I + A+ Q+EL T + S + K Sbjct: 63 TNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEG---------KKL 113 Query: 101 LATYLTPDEKALADTLVREQKL-LDEKGFAPALNALNGGDMKTVATLIHGDIARYATSIT 159 LAT EK T +R+ + L E A NA+ MK A Y S+ Sbjct: 114 LATVA---EKRATYTAIRDDVMNLREARGAELQNAI-ANKMKPAADA-------YIQSVE 162 Query: 160 ETMNALIQLQTEVAKSEYENSQQR----YQSFRSFSIAAIICSILVGSLIGLWLIRSINR 215 +NA I + +E+++ R YQS R I + ++ +G ++ L RSI + Sbjct: 163 AVVNAQI--------NNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITK 214 Query: 216 PLNSAIEVAQRIASGDLTQSIEVGGTNEMGRLLRALQEMSKALTQAVTQVRHSTDSITTA 275 PL+ A+ VA+ +ASGDLT I V +E G+LL+AL++M+ +LT ++TQVR D+I TA Sbjct: 215 PLDYAVSVARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATA 274 Query: 276 SAEIASGNLDLSSRTEEQAASLEQTASSMEELTSTVKQNADNALQANVLMAQARKQAENG 335 S +IASGNLDLSSRTEEQA+SLE+TASSMEELTSTVKQNADNA QAN L A AE G Sbjct: 275 SNQIASGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKG 334 Query: 336 GGIVNQVVATMNDIKQSSSHMVDIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 395 G +V++VV TM+ I S+ +VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 335 GTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 394 Query: 396 SEVRGLAQRSASAAKEIRELIEASLQKISSGGNLVNDAGAVMEETVDSVKRVAQLMEDIA 455 SEVR LAQRSA+AAKEI+ LI+ S+ K+ +G LV +AG M E VDSVKRV +M +I Sbjct: 395 SEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIM 454 Query: 456 AASQEQSNGIDQVNLAIGQMDQVTQQNAALVEEAAAAASSLRDQAQILTGAVSVFK 511 AASQEQS GI+QVN AIGQMDQVTQQNAALVEEAAAAA SL +QA L AVS+FK Sbjct: 455 AASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFK 510 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 357 bits (916), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/339 (63%), Positives = 258/339 (76%), Gaps = 3/339 (0%) Query: 173 AKSEYENSQQRYQSFRSFSIAAIICSILVGSLIGLWLIRSINRPLNSAIEVAQRIASGDL 232 AK+E +N Y S R F + ++ + +L+ L RSI RPL A+EVA+ +A GDL Sbjct: 179 AKTEVDN---LYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDL 235 Query: 233 TQSIEVGGTNEMGRLLRALQEMSKALTQAVTQVRHSTDSITTASAEIASGNLDLSSRTEE 292 IEV ++E G+LL+AL++M+ L ++V++VR ++I TAS +IA+GNLDLSSRTEE Sbjct: 236 RNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEE 295 Query: 293 QAASLEQTASSMEELTSTVKQNADNALQANVLMAQARKQAENGGGIVNQVVATMNDIKQS 352 QA+SLE+TASSMEELTSTVKQNADNA QAN L A AE GG +V+QVV TM DI S Sbjct: 296 QASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSS 355 Query: 353 SSHMVDIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSASAAKEI 412 + +VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEI Sbjct: 356 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 415 Query: 413 RELIEASLQKISSGGNLVNDAGAVMEETVDSVKRVAQLMEDIAAASQEQSNGIDQVNLAI 472 + LI S+ K+ G LV +AG MEE V+SVKRV +M +I AASQEQS GI+QVN AI Sbjct: 416 KTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAI 475 Query: 473 GQMDQVTQQNAALVEEAAAAASSLRDQAQILTGAVSVFK 511 GQMDQVTQQNAALVEEAAAAA SL +QA L AVSVFK Sbjct: 476 GQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFK 514 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.125 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 704,564 Number of extensions: 22745 Number of successful extensions: 187 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 15 Length of query: 523 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 437 Effective length of database: 716,977 Effective search space: 313318949 Effective search space used: 313318949 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)