BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3652.p (295 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 127 1e-30 gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herm... 108 2e-25 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 107 6e-25 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 105 3e-24 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 104 5e-24 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 127 bits (318), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 135/248 (54%), Gaps = 8/248 (3%) Query: 49 LAGKVALITGGDSGIGRAVALAYAREGARLAIVYLDEEEDARQTQQQVQGLDAPCLLLPG 108 LAG+VAL+TG GIGRA+A A A++G ++ E A ++ + L Sbjct: 6 LAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVL---- 61 Query: 109 DVGSPEFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIFSMFYM 168 DV + + + + +G + +LVNNA ++ ++ E+ + TN+ S+ + Sbjct: 62 DVNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAM-RMKDEEWDSVIATNLTSVGRL 120 Query: 169 VKEAMPFLTRG--ARIINTTSVTAYRGSKHLVDYAATKGTIVAFTRSLSQQLAAAGIHVN 226 + + + + RIIN TSV G+ ++YAA K + +R+L++++ + I VN Sbjct: 121 SRAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVN 180 Query: 227 AVAPGPIWTPLIPSSFSEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTGQVLH 286 VAPG I T + + SE+++++ + VPLGR G P+++A A FLA+ ASY+TG LH Sbjct: 181 CVAPGFIDTDM-TKTLSEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLH 239 Query: 287 PNGGEIVN 294 NGG +N Sbjct: 240 VNGGMYMN 247 >gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 249 Score = 108 bits (271), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 6/248 (2%) Query: 49 LAGKVALITGGDSGIGRAVALAYAREGARLAIVYLDEEEDARQTQQQVQGLDAPCLLLPG 108 ++ KV ++TGG GIG +A A +G + I YL + A ++ + + Sbjct: 1 MSKKVMIVTGGSRGIGAEIAKLGAIDGYAVCISYLHNKTAADAIVDLIRLTGGTAMAVAA 60 Query: 109 DVGSPEFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIFSMFYM 168 D+ V G L LVNNA ++Q+ +++ F TNI F Sbjct: 61 DMAVEADILRMFETVDRELGPLTALVNNAGILEQQMRVDQMDAARMQRIFTTNIVGSFLC 120 Query: 169 VKEAMPFLTR-----GARIINTTSVTAYRGS-KHLVDYAATKGTIVAFTRSLSQQLAAAG 222 +EA+ ++ G I+N +SV A G VDYAA+KG I T L++++A G Sbjct: 121 AREAVRRMSTLHGGAGGAIVNVSSVAARTGGPGEYVDYAASKGAIDTLTIGLAKEVATEG 180 Query: 223 IHVNAVAPGPIWTPLIPSSFSEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTG 282 I VNAV PG I+T + S V NVP+ R G+ +EVA A ++L ++ ASY TG Sbjct: 181 IRVNAVRPGVIYTEIHASGGEPGRVDRVKGNVPMQRGGEANEVAQAVLWLLSDKASYTTG 240 Query: 283 QVLHPNGG 290 +L GG Sbjct: 241 TLLDVTGG 248 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 107 bits (268), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 7/186 (3%) Query: 109 DVGSPEFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIFSMFYM 168 D+ E + A+ ++EA G + VLVNNA A ++ Q ++ F + Sbjct: 59 DITDAEATKVALETLLEA-GPVQVLVNNAGIHSDA-VFPGMTSAQWHSVIDVSLHGFFNV 116 Query: 169 VK-EAMPFL-TRGARIINTTSVTAYRGSKHLVDYAATKGTIVAFTRSLSQQLAAAGIHVN 226 + MP + TR RIIN +S+ A G++ V+Y+A KG + + T+SL+ +LA+ GI VN Sbjct: 117 TQPLTMPMIRTRWGRIINVSSIAAVTGNRGQVNYSAAKGALHSATKSLALELASRGITVN 176 Query: 227 AVAPGPIWTPLIPSSFSEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTGQVLH 286 AVAPG I T +I +F ++ + + VP+ R G+P+EVA FLA+ A+Y++GQ++ Sbjct: 177 AVAPGIIATGMIEEAFDDKAIQNI---VPMKRAGKPEEVADLIGFLASPNAAYISGQIIS 233 Query: 287 PNGGEI 292 NGG I Sbjct: 234 INGGMI 239 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 105 bits (262), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 126/245 (51%), Gaps = 9/245 (3%) Query: 52 KVALITGGDSGIGRAVALAYAREGARLAIVYLDEEEDARQTQQQVQGLDAPCLLLPGDVG 111 ++AL+TGG G+G A+ + A G ++ Y A + ++ P DV Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 112 SPEFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIFSMFYMVKE 171 + + V + + G +DVLVNNA + +++ + + TN+ S+F M K Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGITRDM-TFKKMEKTDWDAVMGTNLDSVFNMTKP 121 Query: 172 AMP-FLTRG-ARIINTTSVTAYRGSKHLVDYAATKGTIVAFTRSLSQQLAAAGIHVNAVA 229 + RG RIIN +SV A +G+ +Y+A K + FT++L+ ++A + VN ++ Sbjct: 122 VCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTIS 181 Query: 230 PGPIWTPL---IPSSFSEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTGQVLH 286 PG I T + IP + ++ +P+GR G+P+EVA +LA++ A+++TG + Sbjct: 182 PGYIGTKMVTAIPQDVLDTKIVP---QIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIA 238 Query: 287 PNGGE 291 NGG+ Sbjct: 239 INGGQ 243 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 104 bits (260), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 11/245 (4%) Query: 52 KVALITGGDSGIGRAVALAYAREGARLAIVYLDEEEDARQTQQQVQGLDAPCLLLPGDVG 111 K AL++GG G+G A+A+ G +A+ Y + A + ++ + C DV Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADTAAEFRKNTS-IPVFCW----DVS 57 Query: 112 SPEFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIFSMFYM--- 168 C+ +R V G +D+LVNNA A + ++ Q TN+ S+F M Sbjct: 58 DYAQCQEGIRQVELDVGPIDILVNNAGITRDA-VLHHMTPGQWIEVINTNLGSVFNMSRN 116 Query: 169 VKEAMPFLTRGARIINTTSVTAYRGSKHLVDYAATKGTIVAFTRSLSQQLAAAGIHVNAV 228 V E M G RIIN +SV RG +YAA K I FT+SL+ + A I VNA+ Sbjct: 117 VIEGMRERNFG-RIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAI 175 Query: 229 APGPIWTPLIPSSFSEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTGQVLHPN 288 APG T ++ S+ +E + +P+G G ++A VFLA + ++TG N Sbjct: 176 APGYCDTDMV-SAIPQEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFDVN 234 Query: 289 GGEIV 293 GG+ + Sbjct: 235 GGQFM 239 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 577,478 Number of extensions: 24160 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 12 Length of query: 295 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 214 Effective length of database: 733,452 Effective search space: 156958728 Effective search space used: 156958728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)