BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3651.p
         (424 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093758|ref|YP_001098833.1| hypothetical protein HEAR0496 [...   419   e-118
gi|134094257|ref|YP_001099332.1| hypothetical protein HEAR1023 [...    92   4e-20

>gi|134093758|ref|YP_001098833.1| hypothetical protein HEAR0496
           [Herminiimonas arsenicoxydans]
          Length = 330

 Score =  419 bits (1077), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/328 (63%), Positives = 239/328 (72%)

Query: 91  MDKNPLIVEADTPIETLGALAVASGDKTLADGFLIVEQGRLAGLGAGLALMRELVAMQEE 150
           MDKNPLIV+A T IETL ALAV SGDKTLA+GFLIVE  +  GLG+GL LMR +V +Q E
Sbjct: 1   MDKNPLIVQAGTHIETLAALAVESGDKTLAEGFLIVENDQFLGLGSGLDLMRMMVDLQTE 60

Query: 151 KNRQVMQSIDYASVIQRAMLSTSRAAMSQALADACLVWEPRDVVGGDFYHFEGHADGWFA 210
           KN QVMQSIDYAS IQRAM+STS  AMS  L DACL+WEPRDVVGGDFYHFE   DGWFA
Sbjct: 61  KNLQVMQSIDYASTIQRAMMSTSLKAMSATLNDACLIWEPRDVVGGDFYHFERFNDGWFA 120

Query: 211 AVGDCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLMREVNRSMKRVLGQHGQADKPS 270
           AV DCTGHGVPGAFLTLIASS L Q L   GP DPA LM EVNR MK  LGQ    ++ S
Sbjct: 121 AVADCTGHGVPGAFLTLIASSLLSQGLSKLGPKDPAMLMSEVNRGMKLALGQFADQNRLS 180

Query: 271 ESDDGMDACFFWFDSTTRTLTSSSAKMPLFLLVADGTEVLTVEGKRVGLGYVDTPEDMQW 330
           ESDDGMDA FFWF+  T  LT ++AK PLF+L+ D  E+ T+EGKRVG+GYVDTP +M W
Sbjct: 181 ESDDGMDAAFFWFNDATSELTCANAKAPLFILMPDQDEIQTIEGKRVGIGYVDTPAEMCW 240

Query: 331 DNHSQVIEPGAMVFVCTDGVIDQIGGPKHIAFGKQRLRRTLLEHGRLAMPALGRMVMDIH 390
           DN +  +   A+V   TDG+IDQIGG K+IAFGKQRLR  LL H    M   G+++M   
Sbjct: 241 DNKTCTLTNDAVVLSATDGIIDQIGGMKNIAFGKQRLRDYLLRHRDTPMEQFGQLLMLEQ 300

Query: 391 AHYQGSQRRRDDICFFAARPGGTSLQDS 418
             YQG  RRRDD+  F  R   ++ + S
Sbjct: 301 KAYQGLHRRRDDLTVFGFRLSASNKRQS 328


>gi|134094257|ref|YP_001099332.1| hypothetical protein HEAR1023
           [Herminiimonas arsenicoxydans]
          Length = 611

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 72/130 (55%)

Query: 19  TAGALAVQVPVVQFDENNATVLEIFGQHKELVSLPVVEQQRPIGLISRHIFMSQMSKPYH 78
           TA  L   V  V  + +N  + E+F     L  +PVV    P+GLI+R   + + ++PY 
Sbjct: 281 TALKLLRSVQSVSPEVHNNRIYEMFNSDPTLEVIPVVSNGLPVGLITRANLIDRFARPYL 340

Query: 79  RELYERKSCIAFMDKNPLIVEADTPIETLGALAVASGDKTLADGFLIVEQGRLAGLGAGL 138
           REL+ +KSC  FMD NPLI + +T +  L  + V +    L +GF+I + G+  G+G   
Sbjct: 341 RELHGKKSCTLFMDSNPLITDKNTALHALSQIIVDADRHHLFNGFIITDAGQYMGMGNAH 400

Query: 139 ALMRELVAMQ 148
            LMRE+  MQ
Sbjct: 401 DLMREITQMQ 410


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 804,220
Number of extensions: 32315
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 424
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 340
Effective length of database: 723,567
Effective search space: 246012780
Effective search space used: 246012780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)