BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3649.p
         (129 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093756|ref|YP_001098831.1| hypothetical protein HEAR0494 [...   186   3e-49

>gi|134093756|ref|YP_001098831.1| hypothetical protein HEAR0494
           [Herminiimonas arsenicoxydans]
          Length = 129

 Score =  186 bits (472), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 105/129 (81%)

Query: 1   MDNLFIAASASSPEVDFRFDQRTLSLKGESYPENAAQFWGDIITTLRRFLADDQEGSPIT 60
           M+N FI ASASSPEVDFRFD+  L LKGE+YPENAA FWGDII  +  +L   +    +T
Sbjct: 1   MNNFFIPASASSPEVDFRFDEHRLLLKGEAYPENAALFWGDIIAAMNTYLGQIESDQQVT 60

Query: 61  VNVALAYFNSSSTKMLFSLFDALNEKAEAGTEVVLNWYHDEEDDTIFEFGQELQEDFAAL 120
           V VAL+YFNSSSTKMLFSLF ALN+KA AG  VVL+WYHDE+DDTIFEFGQELQEDF  L
Sbjct: 61  VQVALSYFNSSSTKMLFSLFSALNDKALAGNTVVLDWYHDEDDDTIFEFGQELQEDFPEL 120

Query: 121 VFHDHAVQS 129
           +F+DHA+++
Sbjct: 121 IFNDHALRT 129


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 223,437
Number of extensions: 7464
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 57
Effective length of database: 763,107
Effective search space: 43497099
Effective search space used: 43497099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)