BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3648.p (240 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093755|ref|YP_001098830.1| putative signaling protein [Her... 289 9e-80 gi|134096466|ref|YP_001101541.1| putative signal peptide [Hermin... 115 3e-27 gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [... 106 1e-24 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 106 1e-24 gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [... 103 9e-24 >gi|134093755|ref|YP_001098830.1| putative signaling protein [Herminiimonas arsenicoxydans] Length = 258 Score = 289 bits (740), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 137/238 (57%), Positives = 180/238 (75%) Query: 1 MEEVDLFHAEAQALRRASEVLADVASDAAAHRAALEELVQHYGQLMRQSRRLISRSDRTE 60 M + DLF AE AL A +V++ + +R AL+ L + + +LMR++RRLI+RSDR E Sbjct: 1 MNDNDLFEAETAALNSAYDVISKDDASGDEYRIALDNLAKDFHRLMRETRRLIARSDRKE 60 Query: 61 RELNLLNTRLKQLSDELDYKARHDNLTGALNRGAVFERAHQILEQSSMSLIVLDIDFFKR 120 ELN LN +L+QL+ ELDYKARHDNLTG LNRGAVF++A L+ + +SLIVLDIDFFKR Sbjct: 61 LELNTLNFKLEQLTSELDYKARHDNLTGVLNRGAVFDQAEHYLKSNPLSLIVLDIDFFKR 120 Query: 121 INDEFGHPTGDAVIRELVGRLRTTLADTGVIGRVGGEEFTILLPDMVLEQAVVLAAKIRQ 180 INDEFGHPTGDAV+RELV +L+++L G IGRVGGEEFT+LLP++ L+ A+ +A +R Sbjct: 121 INDEFGHPTGDAVLRELVKKLKSSLNGVGEIGRVGGEEFTVLLPNISLDDAIEIAENVRL 180 Query: 181 AIAGERFQCLPARAVTSSFGVAWAVAGSDFEDAYARADQALYQAKRGGRNRVESEDTV 238 AIA E F C P VT+SFG++W+ DFE+AY RAD ALY+AK GRNRVE++ ++ Sbjct: 181 AIAAETFTCFPRPHVTASFGISWSDTNCDFENAYGRADAALYKAKHNGRNRVEADISI 238 >gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 492 Score = 115 bits (287), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 93/158 (58%), Gaps = 12/158 (7%) Query: 84 DNLTGALNRGA---VFERAHQILEQS----SMSLIVLDIDFFKRINDEFGHPTGDAVIRE 136 D LTG LNR A VF++A IL+ +S I+ DIDFFK +ND GH GD +++ Sbjct: 326 DTLTGLLNRQAFEIVFQQA--ILDSERRRIPLSAILFDIDFFKMVNDNHGHLAGDRILQS 383 Query: 137 LVGRLRTTLADTGVIGRVGGEEFTILLPDMVLEQAVVLAAKIRQAIAGERFQCLPARA-- 194 + + + ++ ++ R GGEEF +LL D LEQA LA KIR IAG F+ LPA A Sbjct: 384 IAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSMIAGHDFE-LPASALH 442 Query: 195 VTSSFGVAWAVAGSDFEDAYARADQALYQAKRGGRNRV 232 +T S GVA + + RAD ALYQAK GRNRV Sbjct: 443 LTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRNRV 480 >gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [Herminiimonas arsenicoxydans] Length = 524 Score = 106 bits (264), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 10/173 (5%) Query: 66 LNTRLKQLSDELDYKARHDNLTGALNRGA---VFERAHQILEQ--SSMSLIVLDIDFFKR 120 L T+L+Q+S+ + R D LTG+LNR +FER E+ + + + +LD+D FK+ Sbjct: 351 LETKLEQMSELV----REDQLTGSLNRRGLEDIFERELARAERRGTPLCIAMLDLDDFKK 406 Query: 121 INDEFGHPTGDAVIRELVGRLRTTLADTGVIGRVGGEEFTILLPDMVLEQAVVLAAKIRQ 180 IND++GH GD + LV ++ TL VI R GGEEF I+LPD +++AV ++++ Sbjct: 407 INDKYGHSAGDEALIHLVRVIKETLRSMDVIARFGGEEFLIVLPDTGMDEAVQTVTRLQR 466 Query: 181 AIAGERFQCLPAR-AVTSSFGVAWAVAGSDFEDAYARADQALYQAKRGGRNRV 232 + + F R +T S GVA D RAD+ALY+AKR G+NRV Sbjct: 467 ELTKQIFMHNHTRLLMTFSAGVALRNEREDQRAMIERADKALYEAKRTGKNRV 519 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 106 bits (264), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 105/211 (49%), Gaps = 15/211 (7%) Query: 30 AHRAALEELVQHYGQLMRQSRRLISRSDRTERELNLLNTRLKQLSDELDYKARHDNLTGA 89 A R L+Q L + ++ L ++ EL LN L+QL AR D LTG Sbjct: 358 ALRGMSNTLIQQREALAQSNQELEAKVSARTAELQELNITLEQL-------ARTDALTGL 410 Query: 90 LNRGAVFERAHQIL-----EQSSMSLIVLDIDFFKRINDEFGHPTGDAVIRELVGRLRTT 144 NR ER + + +++LD+DFFKR+ND +GH GD V++ + L T Sbjct: 411 ANRMHTNERLAEEFARFKRSKIPYCILMLDVDFFKRVNDIYGHGVGDEVLKHVASILSAT 470 Query: 145 LADTGVIGRVGGEEFTILLPDMVLEQAVVLAAKIRQAIAGERFQCLPARAVTSSFGVAWA 204 + T +GR GGEEF +LP A+V+A KIR I E P +T S GV Sbjct: 471 VRKTDFVGRHGGEEFLSILPMTDSSAAMVVAEKIRNTI--ESTPIGPVGNLTVSIGVQEV 528 Query: 205 VAGSDFED-AYARADQALYQAKRGGRNRVES 234 ED A RAD+ +YQAK+ GRN+V S Sbjct: 529 TVNDINEDVAVTRADECMYQAKKSGRNKVIS 559 >gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [Herminiimonas arsenicoxydans] Length = 322 Score = 103 bits (256), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 16/163 (9%) Query: 84 DNLTGALNRGAVFERAHQILEQS-----SMSLIVLDIDFFKRINDEFGHPTGDAVIRELV 138 D LTG NR + ++ +++E++ +SLI++D+D+FK+ ND++GH GD +R Sbjct: 164 DGLTGLYNRAWLNDKLAELVEEAHHAGRPLSLIMIDLDYFKKFNDQYGHQMGDHALRVAA 223 Query: 139 GRLRTTLADTGVIGRVGGEEFTILLPD-------MVLEQAVVLAAKIRQAIAGERFQCLP 191 G L L + R GGEE T++LPD MV ++ L ++R+A+ E +P Sbjct: 224 GVLNAALRPSDFAVRYGGEELTVILPDSNATTGRMVAQR---LCERMREAVVFEDMH-VP 279 Query: 192 ARAVTSSFGVAWAVAGSDFEDAYARADQALYQAKRGGRNRVES 234 +T+SFG+A A D ED RAD ALY+AK GRN++ + Sbjct: 280 LPHLTASFGIATLDAQHDQEDLVTRADAALYRAKEAGRNQISA 322 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 390,876 Number of extensions: 14987 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 31 Length of query: 240 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 161 Effective length of database: 740,042 Effective search space: 119146762 Effective search space used: 119146762 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)