BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3647.p
         (211 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093685|ref|YP_001098760.1| putative C4-dicarboxylate trans...    74   4e-15

>gi|134093685|ref|YP_001098760.1| putative C4-dicarboxylate
           transport transcriptional regulatory protein dctR
           [Herminiimonas arsenicoxydans]
          Length = 196

 Score = 74.3 bits (181), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 22/200 (11%)

Query: 8   HIVGGEDSLGGPLVRLLEAAGFHVAHHPSADQFL---QQATGGTPRG--LVLEVHMQDVD 62
           HI+  E+ +   L+ L ++ G     + S   FL      +  TP+G  ++L+V M DV 
Sbjct: 3   HIIDDEEVIRDSLMWLAKSRGIPAVAYDSGKAFLATLDSISRTTPQGQCVLLDVRMPDVS 62

Query: 63  APQLRSLLDQRETGR--PLIVITGEPSAMMQQEARSNALSTGQHSDMDAGTGKHEQPMLR 120
              L  LL  R   +  P+I +TG     M       A+ T +    D      E+P   
Sbjct: 63  GIALFDLLSSRSMTQLFPVIFLTGHGDVPM-------AVDTLKRGAFDF----FEKPFND 111

Query: 121 EQLVAAFRGALMPFDESGPQMQQRQEHHQRLKTLTRREREVLERLVKGRLNKQIAAELGT 180
            +L+   + AL     +  Q       H RL  L+ REREVL+ +++G++NK IA +LG 
Sbjct: 112 NKLMDRVQEAL----SASEQASASVAIHTRLAALSGREREVLDLILEGKMNKVIADKLGI 167

Query: 181 SERTVKAHRQQVMRKMNAGS 200
           S RTV+ HR  +  KMN  +
Sbjct: 168 SMRTVEVHRAHIFDKMNVKT 187


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 370,020
Number of extensions: 14557
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 133
Effective length of database: 743,337
Effective search space: 98863821
Effective search space used: 98863821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)