BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3646.p (448 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [... 78 9e-16 gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [... 78 1e-15 gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548 [... 66 4e-12 gi|134096598|ref|YP_001101673.1| two-component regulatory system... 62 4e-11 gi|134094832|ref|YP_001099907.1| two-component regulatory system... 58 1e-09 >gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [Herminiimonas arsenicoxydans] Length = 399 Score = 77.8 bits (190), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%) Query: 230 LSLRMGMTSHHAKDAMMAGMLHGIGKLDLSDELVRKPIEKMSSEELQRFLWHPVKGQMLL 289 L+ +M + +DA +AG+LH +GK+ +S ++ KP +++ EE HPV+G +L Sbjct: 170 LARKMKLDDGQIRDAGLAGLLHDVGKMMVSQSILDKP-GQLTDEEFVVVKEHPVEGHKIL 228 Query: 290 TPIPTLAEAG-EIIRHQHERYDGRGVPESLSGDAIPLGSRILAVVRDFEGLCNGGITSNN 348 + P ++EA ++ H HER+DG G P L+G+ I L +R+ AV ++ + + Sbjct: 229 SVSPDVSEAALDVCLHHHERFDGTGYPHRLAGENISLFARMGAVCDVYDAITSNRAYKAG 288 Query: 349 VSVEKALAMLRTHANHRYDPLVVETFIAMM 378 ++L + H +DP V + F+ + Sbjct: 289 WEPSESLRRMAEWKGH-FDPAVFQAFVKCI 317 >gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [Herminiimonas arsenicoxydans] Length = 457 Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 1/174 (0%) Query: 201 MMQVFSDISELRAGLATGQSARVARWCEQLSLRMGMTSHHAKDAMMAGMLHGIGKLDLSD 260 + F + + ++ +G SARVA + + ++ MG++ + +LH +GKL +S+ Sbjct: 276 IAAAFGQVVDSKSPYTSGHSARVALYTDMIAEAMGLSPERRRWLKRGALLHDVGKLGVSN 335 Query: 261 ELVRKPIEKMSSEELQRFLWHPVKGQMLLTPIPTLAEAGEIIRHQHERYDGRGVPESLSG 320 ++ KP +K+ +E H + +L+ I AE I HER DG G P L Sbjct: 336 SVLDKP-DKLDRDEWDAVKLHATYTENILSRIGAFAELARIAGAHHERLDGGGYPRGLKA 394 Query: 321 DAIPLGSRILAVVRDFEGLCNGGITSNNVSVEKALAMLRTHANHRYDPLVVETF 374 DAI + +RI+ F+ + + + + L M+ T DPL E Sbjct: 395 DAISIETRIITTADIFDAITAERPYRGAIPIPRTLEMMATTQGTALDPLCFEAL 448 >gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548 [Herminiimonas arsenicoxydans] Length = 198 Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 3/162 (1%) Query: 219 QSARVARWCEQLSLRMGMTSHHAKDAMMAGMLHGIGKLDLSDELVRKPIEKMSSEELQRF 278 S RV +L G+ +A H IGK+ + D +++KP ++ EE Sbjct: 37 HSDRVVTLATKLGAACGIPLVDMPVLRLAAQFHDIGKIGVPDNVLKKP-GPLTQEEWVLM 95 Query: 279 LWHPVKGQMLL--TPIPTLAEAGEIIRHQHERYDGRGVPESLSGDAIPLGSRILAVVRDF 336 H +G+ + T +P IIRH HE +G G P+ L G+ IPL SRILAV + Sbjct: 96 RSHTERGERIFRATGLPIADRIAPIIRHHHEVINGTGYPDGLQGEEIPLMSRILAVADAY 155 Query: 337 EGLCNGGITSNNVSVEKALAMLRTHANHRYDPLVVETFIAMM 378 + + ++ ++L + ++D +V F M+ Sbjct: 156 DAMTTTRPYREALTHRQSLDFIELDKGVKFDTAIVGVFFKMV 197 >gi|134096598|ref|YP_001101673.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 474 Score = 62.4 bits (150), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 25 VLLVDDEQSILSALKRTFRPQGYQLLTATSAEAGLDILASAEVDLVISDMRMPGMNGAQF 84 +L+VDDE + S L+RT + ++ S EA +L S DL+I D +PG +G ++ Sbjct: 39 ILIVDDEPGMRSFLQRTLEDRCSRVEAVDSVEAASVLLDSRHFDLIILDNSLPGKSGVEW 98 Query: 85 LAQVRQRWPATMRILLTGYSEIGSTISAINDGGINHYLAKPWDDRELLMTVTHALEEQQL 144 L ++R +L+T ++++ + I A+ G + +L KP+ ++L + + L Sbjct: 99 LHEMRALGLHNDVVLITAFADLETAIHALRAGAAD-FLLKPFRVNQILSAIGRCFDRTHL 157 Query: 145 RKQKMALERKV 155 R++ L R++ Sbjct: 158 RRENFILRREL 168 >gi|134094832|ref|YP_001099907.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 232 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 23 PCVLLVDDEQSILSALKRTFRPQGYQLLTATSAEAGLDILASAEVDLVISDMRMPGMNGA 82 P LLV+DE I ++ +G+Q+ A + + GL + + +L++ D+ +P +G Sbjct: 6 PIALLVEDEPQIRRFVRAALEEEGWQIFEAETMKRGLIDAGTRKPNLIVLDLGLPDGDGV 65 Query: 83 QFLAQVRQRWPATMRILLTGYSEIGSTISAINDGGINHYLAKPWDDRELLMTVTHALEEQ 142 F+ VR +W I+L+ + I A+ D G + YL+KP+ ELL V + Q Sbjct: 66 DFIHDVR-KWSTVPIIVLSARTNESDKIKAL-DAGADDYLSKPFGVGELLARVRSTVRRQ 123 Query: 143 Q 143 Sbjct: 124 H 124 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 776,034 Number of extensions: 30588 Number of successful extensions: 172 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 11 Length of query: 448 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 363 Effective length of database: 720,272 Effective search space: 261458736 Effective search space used: 261458736 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)