BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3645.p (453 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096599|ref|YP_001101674.1| putative sensor histidine kinas... 116 3e-27 gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate senso... 94 1e-20 gi|134094132|ref|YP_001099207.1| putative two-component system s... 86 4e-18 gi|134093420|ref|YP_001098495.1| putative two-component sensor k... 74 1e-14 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 68 9e-13 >gi|134096599|ref|YP_001101674.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 678 Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 138/292 (47%), Gaps = 50/292 (17%) Query: 149 RKQLEDALQCQAEEQRALIEQLKMAQAQLLQSEKLASIGQLAAGVAHEINNPIGFVNANL 208 RK +E ++ + + L AQ QL+ +EKLA+IG++ AGVAHEINNP+ + NL Sbjct: 427 RKVIERTIELEKTNK-----LLVKAQQQLVLAEKLAAIGEITAGVAHEINNPVAVLQGNL 481 Query: 209 NTLGNYVATLLEGIKLYQCVAGGKLPSSVAQSELQSFEDRADLQFLSEDVTELLSESNEG 268 + L + + ++ Q EL+ + + Sbjct: 482 DVLRDTLGA----------------AATPVQGELRLMDQQ-------------------- 505 Query: 269 LQRVKNIVQSLKDFSRTGE--SNWQMADLHRGLDSTLNIANNEL-KYKVNIVKQYGELPM 325 + R+ IV L F+ GE + + + TL + + L + + +V Sbjct: 506 IHRINTIVTKLLQFASPGEFAGYVEAIAVDEVVVDTLVLVRHLLNQSNIEVVHNRHATLA 565 Query: 326 VKCLASELNQVFMNLLVNAAQAISERGSVTIRT----ERHGDR-VAVSISDTGHGIAPEH 380 V EL QV +NL NA A+ G +TI + + G R V +++ DTG GI E Sbjct: 566 VHINRGELQQVLINLFTNAVHAMKNGGRLTIESRDWIDDAGARGVTINVIDTGAGIKKED 625 Query: 381 INRIFEPFFTTKPVGSGTGLGLSLSYGIIKKHGGDIHVCSEPGQGTTFRIEL 432 RIF+ FFTTK G GTGLGLS+SY ++ ++GG I V SE G GT F + L Sbjct: 626 QARIFDAFFTTKRQG-GTGLGLSISYTLVARYGGTITVKSEEGVGTEFTVRL 676 >gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate sensor protein dctS [Herminiimonas arsenicoxydans] Length = 599 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 104/395 (26%), Positives = 173/395 (43%), Gaps = 62/395 (15%) Query: 53 DFRLTFVSENASRVLGYEPQEMLDD--PNFWFNHIHPDDTANIFSSLAMLFVEDQKIYEY 110 D R+T+V+ S+++G +E++ P ++ + FS + V Q +E Sbjct: 237 DGRVTYVNPAFSQMVGIAAEEIVGHLPPMPYWAPEAMSEYQRRFSHVVAGTVTPQG-FET 295 Query: 111 RFRTRDGSYLWMHDTLRLIRDASGTPLEVIGLMTDITGRKQLEDALQCQAEEQRALIEQL 170 F+ DG + + + D +G +G + DI+ RK++ED + Q E+ +A Sbjct: 296 IFQHADGRRIPVLIFESPLVDDTGKQTGWMGSILDISDRKRVEDLNRQQQEKLQA----- 350 Query: 171 KMAQAQLLQSEKLASIGQLAAGVAHEINNPIGFVNANLNTLGNYVATLLEGIKLYQCVAG 230 S +LA++G++A+ +AHE+N P+ +++ N +A Sbjct: 351 ---------SARLATMGEIASTLAHELNQPLAAISSYTTGALNLLA-------------- 387 Query: 231 GKLPSSVAQSELQSFEDRADLQFLSEDVTELLSESNEGLQRVKNIVQSLKDFSRTGESNW 290 SE Q E +++ L T+ L ++N QR I++S+ F + E Sbjct: 388 ---------SE-QPKEATINIEML----TQALEKANAQAQRAGQIIRSVHTFVKKREPMR 433 Query: 291 QMADLHRGLDSTLNIANNELK-YKVNI-VKQYGELPMVKCLASELNQVFMNLLVNAAQAI 348 + + S + + + Y V I V LP V L QV +NL N +++ Sbjct: 434 TAISISELIGSVTPLVELQAQQYFVTIKVDIPAALPAVLADQVLLEQVLLNLTRNGIESM 493 Query: 349 SE----------RGSVTIRTERHGDRVAVSISDTGHGIAPEHINRIFEPFFTTKPVGSGT 398 ++ T R+ V VSISD GHGIA E R++ PFF+TK G Sbjct: 494 QSVAPEKRILRIAAAIDPATPRN---VVVSISDQGHGIASEVAERLYSPFFSTK--ADGM 548 Query: 399 GLGLSLSYGIIKKHGGDIHVCSEPGQGTTFRIELP 433 G+GLS+ I+ HGG + G GT FR LP Sbjct: 549 GMGLSICRTAIEFHGGTLTHVDNRGGGTIFRFSLP 583 >gi|134094132|ref|YP_001099207.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 1544 Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 32/328 (9%) Query: 124 DTLRLIRDASGTPLEVIGLMTDITGRKQLE-DALQCQAEEQRALIEQLKMAQAQLLQSEK 182 D L+++ LE GL D+ + + AL + E + L+ Q QL++S K Sbjct: 1224 DLLQILSTQIAISLENAGLYNDLEQKIEARTQALSQKNAELHTTLNSLRQTQKQLVESAK 1283 Query: 183 LASIGQLAAGVAHEINNPIGFVNANLNTLGNYVATLLEGIKLYQCVAGGKLPSSVAQSEL 242 LAS+GQL AGVAHEIN P+G + +TL E +L G++ +S+L Sbjct: 1284 LASLGQLVAGVAHEINTPVGVSMTSASTLAE------ETTRLKTLFQSGEMK----RSDL 1333 Query: 243 QSFEDRADLQFLSEDVTELLSESNEGLQRVKNIVQSLKDFSRTGES-NWQMADLHRGLDS 301 ++ A +++LL + ++R ++QS KD + S ++ L +D Sbjct: 1334 DTYVGTA------ATISKLLLSN---MERAATLIQSFKDVAVDQASEERRIFRLKMYIDE 1384 Query: 302 TL-NIANNELKYKVNIVKQYGELPMVKCLASELNQVFMNLLVNA-----AQAISERGSVT 355 L N++ + + + E + L Q+ N ++NA +S + Sbjct: 1385 VLSNLSPMLRRSEHRMTVDCEETLEIDTYPGALAQIITNFVMNALLHAFPDDVSGEMLIV 1444 Query: 356 IRTE----RHGDRVAVSISDTGHGIAPEHINRIFEPFFTTKPVGSGTGLGLSLSYGIIKK 411 +R D + + SD G GI +++ +IF+PFFTT G+GLGL++ + ++ Sbjct: 1445 VRNVYAKGMETDLIELRFSDNGIGIPQKNLTKIFDPFFTTMRGSGGSGLGLNIIHNLVTG 1504 Query: 412 H-GGDIHVCSEPGQGTTFRIELPIDPAS 438 G I V S+ G GTTF + P +P++ Sbjct: 1505 SLQGQISVESQMGDGTTFIVRFPRNPSA 1532 >gi|134093420|ref|YP_001098495.1| putative two-component sensor kinase [Herminiimonas arsenicoxydans] Length = 767 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 122/257 (47%), Gaps = 48/257 (18%) Query: 177 LLQSEKLASIGQLAAGVAHEINNPIGFVNANLNTLGNYVATLLEGIKLYQCVAGGKLPSS 236 ++ +++ + G++A +AHEI NP+ + +L + Sbjct: 524 VISAQRSIAWGEVARRLAHEIKNPLTPI---------------------------QLSAE 556 Query: 237 VAQSELQSFEDRADLQFLSEDVTELLSESNEGLQRVKNIVQSLKDFSRTGESNWQMADLH 296 Q +L+ + D + L ++++ + +QR +V +D+++T + DL+ Sbjct: 557 RLQMKLEGKLNEQDARILERSTATIVNQVS-AMQR---MVDDFRDYAKTPPAVLSPLDLN 612 Query: 297 RGLDSTLNIANNELKYKVNIVKQYGELPMVKCLASELNQVFMNLLVNAAQAISER----- 351 ++ L++ + + + LP+V A++L QV NLL NA A++++ Sbjct: 613 ALIEEILHLYQTGDERDIIHARLAEGLPLVMGDATQLRQVIHNLLQNAQDAVADQIRQES 672 Query: 352 -GSVTIRTE----RHGD-----RVAVSISDTGHGIAPEHINRIFEPFFTTKPVGSGTGLG 401 + I TE R D V +SI+DTG G +P+ + FEP+ T+KP GTGLG Sbjct: 673 TARIDIITEEIHYRSSDGTVSNAVQLSITDTGPGFSPKILAHAFEPYITSKP--RGTGLG 730 Query: 402 LSLSYGIIKKHGGDIHV 418 L++ II++HGG I + Sbjct: 731 LAMVKKIIEEHGGRIDI 747 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 68.2 bits (165), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 11/109 (10%) Query: 333 LNQVFMNLLVNAAQAISERGSVTIRTERHGDRVAVSISDTGHGIAPEHINRIFEPF---- 388 L Q+F+NLL NA + ++ GSVT+ E V + DTG GIA + RIF+PF Sbjct: 243 LRQIFINLLTNAVR-FTDDGSVTLHVECSPASVRFDVVDTGIGIAVQDRQRIFQPFERGA 301 Query: 389 ---FTTKPVGSGTGLGLSLSYGIIKKHGGDIHVCSEPGQGTTFRIELPI 434 +P G GLGL+++ +I G +++ S GQG+TF + LP+ Sbjct: 302 AGRLRGEP---GAGLGLAITEKLILLMNGSLNLVSMQGQGSTFIVRLPL 347 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 808,178 Number of extensions: 31058 Number of successful extensions: 188 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 175 Number of HSP's successfully gapped: 19 Length of query: 453 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 368 Effective length of database: 720,272 Effective search space: 265060096 Effective search space used: 265060096 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)