BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3643.p (544 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 177 1e-45 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 175 6e-45 gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 168 7e-43 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 162 4e-41 gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [... 159 4e-40 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/261 (38%), Positives = 158/261 (60%), Gaps = 5/261 (1%) Query: 263 SQARLSPLAELQLAVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPL 322 + +L + +L+LA+ ++EF + YQP +G VGAEAL+RW+ P ++ PD FI L Sbjct: 435 AHNQLQVIQDLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIAL 494 Query: 323 AEESGLILPLTDLVIETVVAELGAILRADRALH--VAINVAAQDIKTGRILEVVGKNLAG 380 AE++GLI+P+ + V++ ++ I + H VA+N++A ++E+V LA Sbjct: 495 AEKTGLIVPIGEWVLDEACRQM-RIWHDEGNQHWKVAVNLSAVQFSNDHLIELVQTTLAR 553 Query: 381 TDIRTEQIWMEATERGCM-DIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDA 439 + + +E TE M D+ ++ L + LG +++DDFGTGYS+L YL+ LP Sbjct: 554 NNFPASGLILEVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATE 613 Query: 440 LKIDKSFVSTIGTGAATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFVQGW 499 LKID+ F+ + G+ S+++ IIA+ +SLNL+IVAEGVET EQ AYL D +QG+ Sbjct: 614 LKIDRGFIRDLAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGY 673 Query: 500 LFAKPMPAGEFVD-FYRATLA 519 L +PM +F+D + A LA Sbjct: 674 LMGRPMAPDQFMDAIHTAALA 694 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 175 bits (443), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 3/247 (1%) Query: 266 RLSPLAELQLAVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPLAEE 325 RL+ L L+ A+ EF++ YQP I L +G +GAEALIRW +G +V P FIPLAEE Sbjct: 459 RLALLNRLRQAIPNHEFVLHYQPKINLANGDIIGAEALIRWNSAEG-MVSPGSFIPLAEE 517 Query: 326 SGLILPLTDLVIETVVAELGAILRADRA-LHVAINVAAQDIKTGRILEVVGKNLAGTDIR 384 +GLI+P+ V+ET + A A A + +++N++++ + G I+E V + LA T + Sbjct: 518 TGLIIPIGVWVLETACRQNRAWQLAGYAPITISVNLSSRQLARGDIVEQVEQVLAETGLE 577 Query: 385 TEQIWMEATER-GCMDIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDALKID 443 + + +E TE D+ + L R R LG ++LDDFGTGYS+L YL+ P+D LKID Sbjct: 578 AQYLELEITESVMASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSYLKRFPVDTLKID 637 Query: 444 KSFVSTIGTGAATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFVQGWLFAK 503 +SFV + T ++A++ II++ +LNL ++AEG+ET EQ +L + + QG+L ++ Sbjct: 638 QSFVRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSACNEGQGYLMSR 697 Query: 504 PMPAGEF 510 P+ F Sbjct: 698 PVSHQHF 704 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 168 bits (425), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 149/247 (60%), Gaps = 2/247 (0%) Query: 266 RLSPLAELQLAVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPLAEE 325 RL +L+ A+ + EF + YQP ++L SG+ VG EALIRW+ P+ +V P FI LAEE Sbjct: 681 RLHIEGDLRNALEREEFTLHYQPQVDLRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEE 740 Query: 326 SGLILPLTDLVIETVVAELGAILRADRA-LHVAINVAAQDIKTGRILEVVGKNLAGTDIR 384 +GLI+P+ VI T + + L +++N++A+ +++ + +L ++ Sbjct: 741 NGLIVPIGAWVIRTACLQNKVWQESGFGHLRMSVNLSARQFAQEDLVDSIAVSLREANLA 800 Query: 385 TEQIWMEATERGCM-DIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDALKID 443 E + +E TE M D+ A L + LG +++DDFGTGYS+L YL+ P+D LKID Sbjct: 801 PEYLEIELTESLVMADVDRAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKID 860 Query: 444 KSFVSTIGTGAATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFVQGWLFAK 503 +SFV+ I +A++ +I++A SL L ++AEGVET EQ YL + D +QG+ F++ Sbjct: 861 RSFVNDITIDPDDAAIVASVISLAHSLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSR 920 Query: 504 PMPAGEF 510 P+ A F Sbjct: 921 PVTAEAF 927 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 162 bits (410), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 143/250 (57%), Gaps = 4/250 (1%) Query: 267 LSPLAELQLAVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPLAEES 326 L L L+ A+ + + V YQP I L SG +GAEAL+RW P+ + P FIP+AEES Sbjct: 604 LQVLNALRQAIAQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNISPAEFIPIAEES 663 Query: 327 GLILPLTDLVIETVVAELGAI--LRADRALHVAINVAAQDIKTGRILEVVGKNLAGTDIR 384 GLIL + + V+ VA+ L D+ L +A+N++A + + +V + L D Sbjct: 664 GLILQIGEWVLRVAVAQAKKWHQLGLDK-LIIAVNLSAVQFRHAGLPNLVMQILKEEDFP 722 Query: 385 TEQIWMEATERGCM-DIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDALKID 443 + + +E TE M D A + E G M++DDFGTGYS+L YL+ LKID Sbjct: 723 PQYLELELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSLSYLKQFKAYKLKID 782 Query: 444 KSFVSTIGTGAATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFVQGWLFAK 503 +SFV I T A A++ II MAK+L L +AEGVET EQ A+L ++ QG+ ++K Sbjct: 783 QSFVRDISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGCHEAQGYHYSK 842 Query: 504 PMPAGEFVDF 513 P+PA +F F Sbjct: 843 PLPAADFETF 852 >gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [Herminiimonas arsenicoxydans] Length = 540 Score = 159 bits (401), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 145/247 (58%), Gaps = 3/247 (1%) Query: 276 AVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPLAEESGLILPLTDL 335 AVR EF++ YQPI++ + + +G EAL+RW RPD +V P+ FIP+AE++GLI L Sbjct: 291 AVRNGEFLLHYQPIVDAQTRQIMGFEALMRWMRPDIGLVPPNQFIPMAEDNGLINLLGAW 350 Query: 336 VIETVVAELGAILRA-DRALHVAINVAAQDIKTGRILEVVGKNLAGTDIRTEQIWMEATE 394 +++ +L A R L+V++NV+ + + + L ++ + L + + Q+ +E TE Sbjct: 351 ALKSACVQLKRFEEAAGRQLYVSVNVSPRQFRNDQFLGMMDEALKLSGLEGHQLMLEITE 410 Query: 395 RGCM-DIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDALKIDKSFVSTIGTG 453 M D A V L + E G +A+DDFGTGYS+L YL+ P+ ALKID++F+ + Sbjct: 411 GILMSDPEHAEVLLNKIAERGVRIAIDDFGTGYSSLIYLKRFPIAALKIDRTFIKDLPAS 470 Query: 454 AATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFVQGWLFAKPMPAGEFVDF 513 +A+ + I+ +A SLNL VAEGVE +Q A+LS Q +QG+ P +D Sbjct: 471 VKDAAICNVILNLAGSLNLQTVAEGVENEQQLAFLSTQGCSLIQGFHTGYPSLPDSLIDI 530 Query: 514 YRA-TLA 519 A TLA Sbjct: 531 LEAETLA 537 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 939,921 Number of extensions: 37024 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 15 Length of query: 544 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 458 Effective length of database: 716,977 Effective search space: 328375466 Effective search space used: 328375466 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)