BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3642.p
         (148 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095522|ref|YP_001100597.1| hypothetical protein HEAR2344 [...    69   1e-13

>gi|134095522|ref|YP_001100597.1| hypothetical protein HEAR2344
           [Herminiimonas arsenicoxydans]
          Length = 154

 Score = 68.6 bits (166), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%)

Query: 28  LAEMDAEHRQVLESISALILVPPERFASGYSALVAQIEEGFREEEKMMDDITYPGLHAHR 87
           + EMD  H+ ++  I +L+ VP   F      LV  +E  FR EE++M+ + YP L AHR
Sbjct: 14  IIEMDKAHKVLMREIMSLMQVPNFEFVRRLPHLVELLEMDFRIEEQLMESMDYPELRAHR 73

Query: 88  RDHAELLALLHRLRPYLEDGNAPLVDIVMGMIPAMLIRHMSGMDQELALALRQQGEVP 145
             HA LL  +H+      +G+  L   V+ M+P  L+ H+  MD     AL+  G  P
Sbjct: 74  EQHAGLLGAMHQALAKAMNGDYQLPRQVLNMLPQWLLWHLVKMDAPFVKALKIAGAKP 131


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 249,965
Number of extensions: 7843
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 74
Effective length of database: 756,517
Effective search space: 55982258
Effective search space used: 55982258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)