BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3640.p (579 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 442 e-125 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 414 e-117 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 410 e-115 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 408 e-115 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 400 e-112 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 442 bits (1136), Expect = e-125, Method: Compositional matrix adjust. Identities = 286/590 (48%), Positives = 384/590 (65%), Gaps = 45/590 (7%) Query: 4 FYDLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSAT---------DIARNWLPSIN 54 F +LKI +L AF ++L+ + + M +L+L V ++ +A+ W+ I Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKGIE 62 Query: 55 SLSKISLALARSRSFDMQQLLTDDKKEEQASRERASKQMEILLKEMSIYGSLVSEPREKE 114 + + + A R+ + ++L + A+ + ++E L+ L + ++ Sbjct: 63 TNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKRA 122 Query: 115 LFLEIQHNVADYKSAH-ERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRK 173 + I+ +V + + A ++ A K A A + + VV QIN + K Sbjct: 123 TYTAIRDDVMNLREARGAELQNAIANKMKPAADAYIQSVEAVV----NAQINNFED--AK 176 Query: 174 GAMDSDDQANQVYQQAR--LAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAA 231 G +D+ +YQ AR L ++GL+A + L ++++W + R + +PL +AV +AR VA+ Sbjct: 177 GRVDT------IYQSARMLLIVLGLVA--LTLGIVLAWMLTRSITKPLDYAVSVARLVAS 228 Query: 232 GDLRAHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSS 291 GDL I + SKDETGQLL AL+ MND+L + +VR G DTI+TAS +IA+GN++LSS Sbjct: 229 GDLTGRITVD-SKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSS 287 Query: 292 RTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGA 351 RTE+QA +LEETAS+MEELTSTV+QN+DNARQANQLAV+AS VA+ GG VV KVV TM Sbjct: 288 RTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDG 347 Query: 352 INDSSRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASA 411 IN S+R+IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+A Sbjct: 348 INTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAA 407 Query: 412 AREIKTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQI 471 A+EIKTLIDDSV KV+ GSKLV EAG TM EVV SVKRV+DI+AEI AAS EQ+ GIEQ+ Sbjct: 408 AKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQV 467 Query: 472 NNAVAQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVSNTANTAA 531 N A+ QMD+ TQQNAALVE+AAAAA++L EQAA L+Q VS+F LD V+N++ A Sbjct: 468 NQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDG-----VANSSRVAT 522 Query: 532 AHNKAARNVLPRHPAVAATRTKIIARPAQAAPSKRQHDS--ADHGDWEQF 579 AA N P ATR + A P AP K +++ DWE+F Sbjct: 523 RLPVAASN----AP---ATR-QFAASP---APKKIANETRPVSGDDWEEF 561 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 414 bits (1065), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/394 (62%), Positives = 298/394 (75%), Gaps = 21/394 (5%) Query: 194 VGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDLRAHIAANTSKDETGQLLDA 253 +G I + LA M++W+ RL+ARPL AV IAR VAAGDL I N S +ETGQLL A Sbjct: 192 IGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVN-STNETGQLLQA 250 Query: 254 LRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQQAGALEETASAMEELTST 313 L+ MND+L V VR GT+TI+ AS EIA+GN +LSSRTE QAG+LEETAS+MEELTST Sbjct: 251 LKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTST 310 Query: 314 VRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDSSRRIVDIIAVIDGIAFQT 373 VRQN+DNARQANQL VSA+EVA GG VV +VV TMG+I DSSR+IVDII VID IAFQT Sbjct: 311 VRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQT 370 Query: 374 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKTLIDDSVTKVEAGSKLV 433 NILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA+EIK LIDDSV KV+AGSKLV Sbjct: 371 NILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLV 430 Query: 434 DEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAVAQMDENTQQNAALVEQAA 493 D+AG TM E+V SVK V+DI++EIT+AS EQ+ GIEQ+N A++QMDE TQQNAALVEQAA Sbjct: 431 DQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAA 490 Query: 494 AAAKALQEQAARLSQTVSVFHLDASQAPLVSNTANTAAAHNKAARNVLPRHPAVAATRTK 553 AAA+++Q+QA LS V++F LDA + + +T+A+ +AA PA+ A Sbjct: 491 AAAQSMQDQAVELSGAVAIFKLDAGGSAM-----STSASTRRAA-------PALQAANPA 538 Query: 554 IIARPAQAAPSK------RQHDSADHG--DWEQF 579 +R AAP K ++ SAD DWE+F Sbjct: 539 TTSRALTAAPHKQLETKPQKPISADKSGDDWEEF 572 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust. Identities = 273/590 (46%), Positives = 371/590 (62%), Gaps = 35/590 (5%) Query: 6 DLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDI----------ARNWLPSINS 55 ++KI +L F ++LL + +G I++L +N ++ + A+NWL + Sbjct: 5 NMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGTSV 64 Query: 56 LSKISLALARSRSFDMQQLLTDDKKEEQASRERASKQMEILLKEMSIYGSLVSEPREKEL 115 + +LAL ++ + Q+ Q + SKQ+ + K + ++ +EKEL Sbjct: 65 NASRTLALVKASDPESQEFF-------QKAITAQSKQITEIQKSIE---DRINSDKEKEL 114 Query: 116 FLEIQHNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRKGA 175 F E+ + Y + + + A G EA+ ++ T D + Sbjct: 115 FAEVAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEV 174 Query: 176 MDSDDQANQVYQQARLA-IVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDL 234 +D+ Y R+A I+G + + + L L++W + + RPL A+ +A VA GDL Sbjct: 175 KLADESITDDYLSGRMALIIGAVIAIL-LGTLIAWRLTVGITRPLHEALKVAESVAEGDL 233 Query: 235 RAHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTE 294 A ++DE G LL AL RM NL V ++R+GTDTI+TAS+EIA+GN++LSSRTE Sbjct: 234 TARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTE 293 Query: 295 QQAGALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAIND 354 QQA +LEETAS+MEELTSTV+QN+DN+RQANQLAV+AS VA GG VV +VV TMGAIN+ Sbjct: 294 QQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINN 353 Query: 355 SSRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAARE 414 S+++IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AA+E Sbjct: 354 SAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKE 413 Query: 415 IKTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNA 474 IKTLI DSV KV+AGSKLV EAG TM+E+V VKRV+DI+AEITAAS EQ+ GIEQ+N A Sbjct: 414 IKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQA 473 Query: 475 VAQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVS---NTANTAA 531 V+QMD+ TQQNAALVE+AAAAA++LQ+QA L++ VSVF + + A S T + A Sbjct: 474 VSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAAPRTVQSTA 533 Query: 532 AHNKAARNV--LPRHPAVAATRTKIIARPAQAAPSKRQHDSADHGDWEQF 579 H A V ++ T +K +A P A A DWE+F Sbjct: 534 MHKPLAAPVKKSSSSSSLTVTESKKVAAPKPVA--------AGGDDWEEF 575 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 408 bits (1048), Expect = e-115, Method: Compositional matrix adjust. Identities = 280/587 (47%), Positives = 373/587 (63%), Gaps = 39/587 (6%) Query: 6 DLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIAR---------NWLPSINSL 56 +LKI +L AF VVLL + + + + +L +V Q+ + W NS Sbjct: 5 NLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAG-NSA 63 Query: 57 SKISLALARSRSFDMQQLLTDDKKEEQASRERASKQMEILLKEMSIYGSLVSEPREKELF 116 + I AR RS T+ + ++Q E ++ +EI K + SL+ K+L Sbjct: 64 NAIRTT-ARIRS-------TNQEVQQQFQNEMTAQSVEIT-KLQNKLESLIHSEEGKKLM 114 Query: 117 LEIQHNVADYKSAHERMEQLFAQGK---KQEAHAVLSTSSTVVYRKLQDQINEATEINRK 173 + Y + + +L A G ++EA ++++ + + + + Sbjct: 115 SAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQV 174 Query: 174 GAMDSDDQANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGD 233 +++ + + +Y R+ ++ L A +AL+ L++W ++R + RPL +AV++AR VA GD Sbjct: 175 TFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGD 234 Query: 234 LRAHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRT 293 LR I N+S DETGQLL ALR MND L V EVR G +TI+TAS +IA GN++LSSRT Sbjct: 235 LRNRIEVNSS-DETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRT 293 Query: 294 EQQAGALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAIN 353 E+QA +LEETAS+MEELTSTV+QN+DNARQANQLAVSAS VA+ GG VV +VV TM IN Sbjct: 294 EEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDIN 353 Query: 354 DSSRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAR 413 S+++IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA+ Sbjct: 354 SSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAK 413 Query: 414 EIKTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINN 473 EIKTLI DSV KV+ GSKLV EAG TM EVV SVKRV+DI++EI AAS EQ+ GIEQ+N Sbjct: 414 EIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQ 473 Query: 474 AVAQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVSNTANTAAAH 533 A+ QMD+ TQQNAALVE+AAAAA++L EQA +L++ VSVF LD A+T A Sbjct: 474 AIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGV-------AASTPA-- 524 Query: 534 NKAARNVLPRHPAVAATRTKIIARPAQAAPSKRQHDSADHGD-WEQF 579 K R + A + I AAP+ +A GD WE+F Sbjct: 525 TKTVRKIAAAASHHAPAKRAI------AAPTPVSPKAATGGDEWEEF 565 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust. Identities = 268/582 (46%), Positives = 363/582 (62%), Gaps = 39/582 (6%) Query: 6 DLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIARNWLPSINSLSKISLALAR 65 ++ I +L + + + L+ G M IL + N + +I N +PS ++ + L + Sbjct: 4 NISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRLLQ 63 Query: 66 SRSFDMQQLLTDDKKEEQASRERASKQMEILL----KEMSIYGSLVSEP-REKELFLEIQ 120 +R+ L + E+ S ER K+ E +E Y SL E E+++ E+ Sbjct: 64 ARA---GLNLVAMRPHEEGS-ERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVT 119 Query: 121 HNVADY-KSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRKGAMDSD 179 Y K A + + G+ +E +L +++ L +E E+ K A Sbjct: 120 AKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGY 179 Query: 180 DQANQVYQQARL-AIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDLRAHI 238 + ++ R+ A+VG++ + +A+ ++++ R + PL + +A+GDL ++I Sbjct: 180 QDSQTLFHYFRIIAVVGVLLGLIGVAIY-AFFLIRAITGPLKEMLLHFDTIASGDLTSNI 238 Query: 239 AANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQQAG 298 S++E G L+ L++M L D V +VR G+ ISTA+TEIA GN++LSSRTEQQA Sbjct: 239 EVK-SRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAA 297 Query: 299 ALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDSSRR 358 +LEETAS+MEELTSTV+QN+DNARQANQLA SAS VA GG VV VV+TM AIN S+R+ Sbjct: 298 SLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARK 357 Query: 359 IVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKTL 418 IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA+EIK L Sbjct: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHL 417 Query: 419 IDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAVAQM 478 IDDSV KV+AG++LV EAG TM EVV SVKRV+DI++EI AAS EQ+ GIEQ+N A+ QM Sbjct: 418 IDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQM 477 Query: 479 DENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVSNTANTAAAHNKAAR 538 DE TQQNAALVEQAAAAA +L++QA LS VSVF L H A + Sbjct: 478 DEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQ---------------GHQSAPQ 522 Query: 539 NVLPRHPAVAATRTKII-ARPAQAAPSKRQHDSADHGDWEQF 579 N++P+ R K + +RPA A + + +D GDWEQF Sbjct: 523 NLVPQ------ARPKALESRPAAIAHTGKGND----GDWEQF 554 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.124 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 708,639 Number of extensions: 21804 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 16 Length of query: 579 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 492 Effective length of database: 713,682 Effective search space: 351131544 Effective search space used: 351131544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)