BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3637.p (555 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 159 3e-40 gi|134095442|ref|YP_001100517.1| diguanylate cyclase/phosphodies... 144 2e-35 gi|134094133|ref|YP_001099208.1| putative response regulator rec... 130 2e-31 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 114 9e-27 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 110 2e-25 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 137/240 (57%), Gaps = 3/240 (1%) Query: 316 SLVKSRQDAMQASHAKSRFLSNMSHEFRTPLNGVLGYSDAL--REELGESPLAQYATAIH 373 +L +++ A A+ AK+R+++ +SHE R+PLN +LGYS L E L +P T IH Sbjct: 111 ALQSAKEAAEFANQAKTRYVAGISHELRSPLNSILGYSQILLKNEHLAAAPRTAIQT-IH 169 Query: 374 DSGNRLLDLVNAILEVTELEDQRVAIQAEPENIRELISQAVARHYPDAQAKGLSLECRIG 433 SG LL LV+ +L++ +E R+ ++ P + + ++ P A+AKGL L C Sbjct: 170 RSGEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLEDLLSMVRPQAEAKGLKLLCTYN 229 Query: 434 DEVPQVVVCDQRKVLRVLENLLGNAVRYTDSGRILVEVERSGSQLSVRIKDTGIGIPAGQ 493 ++ + V+ D +++ ++ NLL NAVR+TD G + + VE S + + + DTGIGI Sbjct: 230 GKISRYVLADGKRLRQIFINLLTNAVRFTDDGSVTLHVECSPASVRFDVVDTGIGIAVQD 289 Query: 494 LDTIFEKFTQADDSERRARDGAGLGLTIAQRLVTLMGGKLMLQSKQHQGSTFSFTLPLQE 553 IF+ F + R GAGLGL I ++L+ LM G L L S Q QGSTF LPL E Sbjct: 290 RQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILLMNGSLNLVSMQGQGSTFIVRLPLTE 349 >gi|134095442|ref|YP_001100517.1| diguanylate cyclase/phosphodiesterase [Herminiimonas arsenicoxydans] Length = 897 Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 152/297 (51%), Gaps = 13/297 (4%) Query: 34 WLGALKELATSRQNNLEDARRDAQSLSRLFLEHAYRTIEAADQAAVYLRYRYGERGQNLD 93 W L +LA+ ++ E+A + A S+S + ++ RTIE D A ++Y + +L+ Sbjct: 42 WSIMLSKLASDKKQLEENAEKQAISISSAYAQYLTRTIEQLDLLAQQIKYSWERSNGSLN 101 Query: 94 LATEIANGLVARNVYNLFSIVDSKGDVALSSKPFTPI-NLSDREHIQVHMHGGPDKLFIS 152 +GL+ + +I + G+ A S+ P T I +SDRE+ Q H L I Sbjct: 102 FEQMSQSGLLNVPQFASLAIYNENGEPATSTLPITRIFTVSDREYFQFHKENASSALRIG 161 Query: 153 KPVLGRVSNKWSLQLTRRINHPDGSFGGVVVVSMDPQYFTSLYHQIDVGHHGVITLLGAD 212 P +GR+SNK +Q+TRRI+ G FGGV+V+ + P++FT +G +G++ +G D Sbjct: 162 TPAIGRLSNKKIIQVTRRIDKEGGVFGGVLVMGITPEFFTLFSDDKVLGQNGILAFIGED 221 Query: 213 GVVRVRRTGEMDAMGEQVSGGKVYAAMLAQGDGVVEAVSR-----IDGRERIYAFHKLRD 267 G+ R+ + G EQ + ++ +A + ++ VS DGR R A KL Sbjct: 222 GIERISKIG-----NEQRTTPVLHMPAIANNN--LDPVSNNTQPYFDGRIRFTATQKLNT 274 Query: 268 YPLYASVGIDIEERLAPYYRERNRTLLLATLITLAVLLFNALLIWLAGSLVKSRQDA 324 YP +A VG+D E+ PY R + LA + + LF+ + +W++ L +Q A Sbjct: 275 YPFFALVGLDREDIFLPYERNLHMYRNLAIAASGLLFLFSIIAMWMSIRLAWRKQQA 331 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] Length = 560 Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 136/243 (55%), Gaps = 8/243 (3%) Query: 320 SRQDAMQASHAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYATAIHDSGNRL 379 ++ +A A+ AKS FL+ MSHE RTP+NG+LG + + +Y S L Sbjct: 178 AKNEAEAANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAQASDVEQREYLETAQYSAEAL 237 Query: 380 LDLVNAILEVTELEDQRVAIQAEPENIRELISQAVARHYPDAQAKGLSLECRIGDEVPQV 439 L ++N IL+ ++LE + +A ++ + + + Q LSL ++P++ Sbjct: 238 LTILNDILDFSKLESGHLEFEAVTFDLPKAVDSVIELMSARMQGAALSLNAECDADLPRL 297 Query: 440 VVCDQRKVLRVLENLLGNAVRYTDSGRILVEVER---SGSQLSVR--IKDTGIGIPAGQL 494 + D ++ +VL NL+GNA+++T+ G + +++ER SG+Q+ +R + D+GIGI A + Sbjct: 298 LTGDVGRLRQVLLNLIGNALKFTEQGSVTLKIERLPASGTQIPLRFTVIDSGIGITAEEQ 357 Query: 495 DTIFEKFTQADDSERRARDGAGLGLTIAQRLVTLMGGKLMLQSKQHQGSTFSFTL---PL 551 +F+ F+QAD S R G GLGL+I +++V + G + ++S +GS F F L P Sbjct: 358 TRLFQSFSQADHSISRRFGGTGLGLSICKKIVEMQRGCIGVESTPGEGSRFWFELTFVPA 417 Query: 552 QEP 554 EP Sbjct: 418 PEP 420 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 114 bits (286), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 132/245 (53%), Gaps = 15/245 (6%) Query: 318 VKSRQDA---MQASHAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLA----QYAT 370 ++ QDA M++ ++ LS +SH+ RTPL ++G S++L + + PL + A Sbjct: 669 IEVAQDALVRMESERLRNSLLSALSHDLRTPLTSLVGLSESL--TMSKPPLTSSQQELAQ 726 Query: 371 AIHDSGNRLLDLVNAILEVTELEDQRVAIQAEPENIRELISQAVARHYPDAQAKGLSLEC 430 A+HD R+ +LV+ +L++ ++ V + E++ A+ R A A ++ Sbjct: 727 ALHDEARRMSNLVSNLLDMARIQSGEVKFNLQWLQFEEVVGSAL-RASQSAIAHH-EIKT 784 Query: 431 RIGDEVPQVVVCDQRKVLRVLENLLGNAVRYTDSG-RILVEVERSGSQLSVRIKDTGIGI 489 R+ ++P +V D + RVL NL+ NA +YT +G RI++ E SG L V + D G G+ Sbjct: 785 RLAPDLP-LVRFDAVLIERVLCNLIENAAKYTPAGSRIVIAAEISGRFLEVSVYDNGPGL 843 Query: 490 PAGQLDTIFEKFTQADDSERRARDGAGLGLTIAQRLVTLMGGKLMLQSKQHQGSTFSFTL 549 PAGQ + IF+KFT+ + A G GLGL I + +V G + G++ +FTL Sbjct: 844 PAGQEEAIFDKFTRGE--RESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTL 901 Query: 550 PLQEP 554 PL P Sbjct: 902 PLGTP 906 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 138/304 (45%), Gaps = 26/304 (8%) Query: 8 PLPLRFARIDLRLALGLF----SLLLICGLWLGALKELATSRQNNLEDARRDAQSLSRLF 63 P + R+ L+ L +F ++LL+C L L A +R + + ++++ Sbjct: 6 PFIRKSKRLSLQATLTVFIVFVTVLLVCILALNAWH----ARAEKIRETETATSNMAKAL 61 Query: 64 LEHAYRTIEAADQAAVYLRYRYGERGQNLDLATEIANGLVARNVYNL-----FSIVDSKG 118 +HA T+ D V + ER L E N + + V +L + D G Sbjct: 62 AQHAEDTVGGIDNLLVSMEEML-ERDSWNPLQLERMNQFLRQRVTDLPLLHGLFVYDEHG 120 Query: 119 DVALSSKPF--TPINLSDREHI---QVHMHGGPDKLFISKPVLGRVSNKWSLQLTRRINH 173 +S+ T +N +DRE+ + H GP + P+ R + W + ++RR+ H Sbjct: 121 QWVANSQETLRTDLNNADREYFIFHRTHTDSGP---HLGPPIRSRSTGDWIITVSRRLEH 177 Query: 174 PDGSFGGVVVVSMDPQYFTSLYHQIDVGHHGVITLLGADGVVRVRRTGEMDAMGEQVSGG 233 DG+F GVV+ +++ QYF++ Y D+G G I L G + VRR + +G +S G Sbjct: 178 ADGNFAGVVLATINMQYFSAYYKDFDIGKAGAIVLTTDSGTLLVRRPFDEAVIGGDISNG 237 Query: 234 KVYAAMLAQG-DGVVEAVSRIDGRERIYAFHKLRDYPLYASVGIDIEERLAPYYRERNRT 292 VY QG G + ID ERIY++ L YPL +V +E L + RN T Sbjct: 238 PVYQFYKRQGSSGTAILTANIDRTERIYSYRHLDRYPLLIAVAQSTDEVLESW---RNST 294 Query: 293 LLLA 296 + A Sbjct: 295 MRFA 298 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 985,704 Number of extensions: 40562 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 22 Length of query: 555 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 469 Effective length of database: 716,977 Effective search space: 336262213 Effective search space used: 336262213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)