BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3633.p
         (193 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095601|ref|YP_001100676.1| hypothetical protein HEAR2424 [...    90   8e-20

>gi|134095601|ref|YP_001100676.1| hypothetical protein HEAR2424
           [Herminiimonas arsenicoxydans]
          Length = 192

 Score = 89.7 bits (221), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 54  GSGSMTWLGFRIYHATLWAPQRPLEENQPFALQLDYKVRISRD----KLASTSIEEIQRM 109
           G GS  W G +IY A LW   +      P A +L   +R +R+    K+A+ S +E++++
Sbjct: 49  GQGSFRWFGLKIYDAALWVGDKGYRAQAPAAAKLVLDLRYARNLQGKKIAAASEDEMRKL 108

Query: 110 SAAPIAGPTLARWKNELGRAFIDVADGDELVGVYLPQRGMRLYDRDKLLAEIADPELARA 169
                +    A W+  +   F DV +G  L GVYLP  G R Y   K + EI D E +RA
Sbjct: 109 GLG--SAQQRASWQAAMENIFPDVNEGTHLSGVYLPNEGARFYLNGKFIGEIMDAEFSRA 166

Query: 170 FFNIWLGQPSRDENLRRRLLGET 192
           FF IWL   +    LR  LL + 
Sbjct: 167 FFAIWLDPQTTAAQLRNALLADA 189


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 344,708
Number of extensions: 12661
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 116
Effective length of database: 746,632
Effective search space: 86609312
Effective search space used: 86609312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)