BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3632.p (305 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 211 2e-56 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 176 2e-45 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 169 2e-43 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 161 5e-41 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 108 5e-25 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 211 bits (538), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 175/289 (60%), Gaps = 2/289 (0%) Query: 7 FELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQSGEAFY 66 + FV V E S + A L +S A S+ + LE+ LG RL+ R+TRRL L++SG A+Y Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 67 RQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPDITLDVV 126 +C L + EAE++ ++ P G L+V +SF I+PLL + R YP++ LD+ Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 127 AANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPRTLEQLS 186 A+R VDL++ G D+AIR P+S + R+LA+ R +L A+P YL G P+T E L Sbjct: 121 LADRRVDLIEDGYDLAIRVGNL-PESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLK 179 Query: 187 GHDLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILIQPNYII 246 H L YS+S++ + F + ++ ++ + M++N+G ++R AAL+G G++ QP++I+ Sbjct: 180 QHACLNYSYSSSGDEWVFG-KGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFIV 238 Query: 247 YDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHFA 295 DDV AGRLV ++ + L I Y RKHL AKVR F+D+LV A Sbjct: 239 ADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYLVACMA 287 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 176 bits (445), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/293 (31%), Positives = 164/293 (55%), Gaps = 1/293 (0%) Query: 9 LFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQSGEAFYRQ 68 F + + GSL+ AA+ LG++ + S+ LA +E RL RL+ R+TRR+ L+ GE + Sbjct: 9 FFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGEIYLAD 68 Query: 69 CKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPDITLDVVAA 128 + +++ E+ ++ +V GLL+++++ F +HI+P L F RLYP++ + + Sbjct: 69 GARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDVQLHLT 128 Query: 129 NRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPRTLEQLSGH 188 +R V+L++ G D IR + PD+ + R++A RR++ A+P YL G+P T L H Sbjct: 129 DRPVNLVEQGFDADIRFGQL-PDARLTARKIADNRRLVCASPAYLKNHGIPLTPRDLQKH 187 Query: 189 DLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILIQPNYIIYD 248 + ++ S+ Q ++ + + +NDG+ A AL+G GI+++ + + Sbjct: 188 NCILLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVVRSEWDVAP 247 Query: 249 DVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHFAEMDYER 301 + +GRL VL++W LP+ I I + + HL AK R +DF++Q F +R Sbjct: 248 YLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAFESHRTDR 300 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 156/287 (54%), Gaps = 4/287 (1%) Query: 7 FELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQSGEAFY 66 + FV V + G+L AA+ LG + +A SR L+ LEE+L L+ R+TRR+ L+ G F Sbjct: 8 LKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLFL 67 Query: 67 RQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPDITLDVV 126 ++ +A L M EAEE + PSG LR+ ++ F + I P + F LYP ITL++ Sbjct: 68 KKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLELT 127 Query: 127 AANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPRTLEQLS 186 + ++ DLL+ D+AIR + DS + R L + L A+P YL G+P T EQL+ Sbjct: 128 SNDQVADLLEHRTDIAIRIGNLQ-DSTLHARALTANPLHLLASPDYLQRHGMPTTPEQLA 186 Query: 187 GHDLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILIQPNYII 246 GH LL + + N+ H G L + + ++ G+ +RA AL G GI +Y+ Sbjct: 187 GHQLLGFLQFESGNTWPIRHAGGE--GLTVTPALFASSGETLRALALHGQGIASLADYMT 244 Query: 247 YDDVVAGRLVPVLDEWDLP-RLVINIAYQGRKHLPAKVRVFIDFLVQ 292 DD+ AGRLV +L+ + R I+ Y L ++ F++FL Q Sbjct: 245 RDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQ 291 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 161 bits (407), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 159/306 (51%), Gaps = 6/306 (1%) Query: 1 VDRWMQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 +D+ Q E FV E S + AA AL ++ R + ALE+RLG RL+ RSTRRL L++ Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 61 SGEAFYRQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 G + C+ L+++ +AE ++A SG L +++ SF +H++P F +P Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 121 ITLDVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPR 180 + + +R VDL+ G D+ IR D N +LA+ +R++ P Y G P+ Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGG-TIDPNFVAIKLAANKRVVCGTPDYFKKHGKPK 179 Query: 181 TLEQLSGHDLLVYS-HSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGIL 239 TL+ L+ H+ L ++ F HR G S+ + NDG+++ EGLGI Sbjct: 180 TLDDLAKHNCLAFNLQGGQQRGWYFNHR-GKTVSVRAQGSLDCNDGELLHRWMSEGLGIA 238 Query: 240 IQPNYIIYDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHFAEMDY 299 + + I + +G L VLD++ +P I Y ++++PAKVR+FI L +++ Y Sbjct: 239 WRSVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFISHLKTMYSQPGY 298 Query: 300 ERKWTR 305 W+R Sbjct: 299 ---WSR 301 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 108 bits (269), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 4/287 (1%) Query: 7 FELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQSGEAFY 66 +F AE S AA LG S +R++ LE+ G L RSTR++ ++ GE Sbjct: 8 LRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFGEGLL 67 Query: 67 RQCKAALTQMKEAEELVNANSVAP-SGLLRVTSSLSFCMKHISPLLPRFHRLYPDITLDV 125 Q + AL + ++ ++ A SG +R+T+ S + + P L R +PDITLDV Sbjct: 68 DQVRPALERFEDLWRTPGSDQQASLSGTVRITAPHSLGTRAVLPALERVAARHPDITLDV 127 Query: 126 VAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPRTLEQL 185 ++R + +D GIDV IR F DS R+ A + + AAP + GVP ++ L Sbjct: 128 RLSDRISNTVDEGIDVGIRV-GFMRDSRFVARKAADMKLPIVAAPRLIKKVGVPENIDAL 186 Query: 186 SGHDLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILIQPNYI 245 S V NT + + G Q + L+ N + AAL G+ +Y+ Sbjct: 187 SSLPATVALDINTGRPWPWHFKAGRQWTPAAPTLVADN-ADMEMGAALAGIAFAQLADYM 245 Query: 246 IYDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVR-VFIDFLV 291 + +G+LV VL+ + P + + R +P +VR VF + LV Sbjct: 246 AAPYIASGKLVRVLESEEPPAWGLYVYRPQRGPIPGRVRAVFDEMLV 292 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 528,791 Number of extensions: 20543 Number of successful extensions: 86 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 9 Length of query: 305 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 224 Effective length of database: 733,452 Effective search space: 164293248 Effective search space used: 164293248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)