BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3630.p
         (352 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093379|ref|YP_001098454.1| putative alcohol dehydrogenase ...    66   3e-12

>gi|134093379|ref|YP_001098454.1| putative alcohol dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 412

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 120/312 (38%), Gaps = 49/312 (15%)

Query: 87  DCAIAIGGGSTLGLGKAIALE------------------SDLPILAIPTTY-AGSEMTP- 126
           D  IA+GGGS + L KA+ +                     LP++A+PTT   GSE TP 
Sbjct: 98  DHVIALGGGSNIDLAKALCVTIPDGKPVAEFIGVLPNAPKALPLIALPTTAGTGSEATPG 157

Query: 127 -IYGITEGGLKKTGRDARVLPRTVIYDPQLSSGLPLALSVTSGINALAHAAEGLYAADA- 184
            I        K    D  + P   + DP+ +   P  ++  SG++AL HA E     D+ 
Sbjct: 158 AILIDPSNATKVAVMDNVLRPVIALIDPEYTYTCPPRVTADSGVDALTHAVESYLTLDSA 217

Query: 185 ---------------NPIMSLLAEEGIRALAAGLPQLTLRSDDQEARSRCLYGAWLCGTV 229
                          + +  + A E I   A  L +      D EAR    Y +      
Sbjct: 218 EFDRGGQVDPGYSGRSSLTMMFAHEAIDLCARYLVRTYDDGSDTEARIGMAYASHYAALS 277

Query: 230 LGNVGMSLHHKLCHTLGGSYNLPHAETHTVILPHALAYNAPAAPHAMQRIARALG----- 284
            G  G++  H + + + G  +  H  T+ V+LP+ L          + ++AR  G     
Sbjct: 278 YGGAGLNAVHGIAYAVAGITHETHGSTNAVMLPYVLDAMRSVRHDELLKVARLFGIKDGD 337

Query: 285 ----AQEAAMGVHALARSLQAPLSLRELGMPYEGLERCTDIAL---QNAYANPRPLERAA 337
                +E  + +  L   L  P +L   G+  E L      AL   + A A P     AA
Sbjct: 338 EARAVKELPVVIRELIGHLGIPTTLATFGIAREQLPGMVADALAVTRLAKAFPVADVPAA 397

Query: 338 LRALLENAWHGH 349
             +++E AW G 
Sbjct: 398 YASIIERAWLGQ 409


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 582,719
Number of extensions: 22203
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 269
Effective length of database: 726,862
Effective search space: 195525878
Effective search space used: 195525878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)