BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3625.p (245 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 202 2e-53 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 176 8e-46 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 171 3e-44 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 133 8e-33 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 91 4e-20 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 202 bits (513), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 105/221 (47%), Positives = 145/221 (65%), Gaps = 3/221 (1%) Query: 25 RLAREGYDIVLHCHSRREAAEQVAAEIASLGRKTRVLQFDVAQREAASQVLLEDIEQHGC 84 RLA +G +++H + R+ A + I + G V FD+ EA ++V LE + + G Sbjct: 20 RLAADGLHVIVHANRGRDKASAICTAIIADGGSAEVAVFDITDAEA-TKVALETLLEAGP 78 Query: 85 YYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMPMVRRRAPGRIVTLAS 144 +V NAGI D FP M W SV+ +L GF+NV PL MPM+R R GRI+ ++S Sbjct: 79 VQVLVNNAGIHSDAVFPGMTSAQWHSVIDVSLHGFFNVTQPLTMPMIRTRW-GRIINVSS 137 Query: 145 VSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPGLIETDMTEEAPVEE-I 203 ++ + GNRGQVNYSAAK + ATK+LALELA R ITVN VAPG+I T M EEA ++ I Sbjct: 138 IAAVTGNRGQVNYSAAKGALHSATKSLALELASRGITVNAVAPGIIATGMIEEAFDDKAI 197 Query: 204 LKLIPARRAGKPEEVAAAVAYLMSPDAAYVTRQVISVNGGL 244 ++P +RAGKPEEVA + +L SP+AAY++ Q+IS+NGG+ Sbjct: 198 QNIVPMKRAGKPEEVADLIGFLASPNAAYISGQIISINGGM 238 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 176 bits (447), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 151/239 (63%), Gaps = 10/239 (4%) Query: 10 FVTGSSRGIGRAIALRLAREGYDIVLHCHSRREAAEQVAAEIASLGRKTRVLQFDVAQRE 69 VTG+SRGIGRAIA LA++G ++ S AA ++ +A G+ VL + A R Sbjct: 12 LVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAA-ISEYLAESGKGV-VLDVNDAARS 69 Query: 70 AASQVLLEDIEQH-GCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVM 128 A L+++I++ G +V NAGIT+D M E+WDSV+ TNL + ++ Sbjct: 70 VA---LIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSRAVLR 126 Query: 129 PMVRRRAPGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPG 188 M++ + GRI+ + SV G GN GQ+NY+AAKAGV G ++ALA E+ R+ITVNCVAPG Sbjct: 127 GMMKAK-HGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPG 185 Query: 189 LIETDMTE---EAPVEEILKLIPARRAGKPEEVAAAVAYLMSPDAAYVTRQVISVNGGL 244 I+TDMT+ E + +L+ +P R G PE++AAAV++L SP A+Y+T + VNGG+ Sbjct: 186 FIDTDMTKTLSEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHVNGGM 244 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 171 bits (433), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 139/238 (58%), Gaps = 5/238 (2%) Query: 10 FVTGSSRGIGRAIALRLAREGYDIVLHCHSRREAAEQVAAEIASLGRKTRVLQFDVAQRE 69 VTG G+G AI ++LA GY +V A + A + + G R DV+ + Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVSDYD 65 Query: 70 AASQVLLEDIEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMP 129 +A Q + ++ G +V NAGITRD F M DWD+V+ TNLD +N+ P+ Sbjct: 66 SAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPVCDG 125 Query: 130 MVRRRAPGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPGL 189 MV R GRI+ ++SV+ G GQ NYSAAKAG+ G TKALALE+A++ +TVN ++PG Sbjct: 126 MV-ERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISPGY 184 Query: 190 IETDMTEEAPVE----EILKLIPARRAGKPEEVAAAVAYLMSPDAAYVTRQVISVNGG 243 I T M P + +I+ IP R GKPEEVA VAYL S +AA+VT I++NGG Sbjct: 185 IGTKMVTAIPQDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIAINGG 242 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 133 bits (335), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 129/247 (52%), Gaps = 29/247 (11%) Query: 10 FVTGSSRGIGRAIALRLAREGYDIVLHCHSRREAAEQVAAEIASLGRKTRVLQF-----D 64 V+G +RG+G AIA+ L GY + + H + A A + T + F D Sbjct: 6 LVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADTA-------AEFRKNTSIPVFCWDVSD 58 Query: 65 VAQ-REAASQVLLE----DIEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGF 119 AQ +E QV L+ DI +V NAGITRD M W V+ TNL Sbjct: 59 YAQCQEGIRQVELDVGPIDI--------LVNNAGITRDAVLHHMTPGQWIEVINTNLGSV 110 Query: 120 YNVLNPLVMPMVRRRAPGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRD 179 +N+ ++ M R R GRI+ ++SV+G G GQ NY+AAKAG+ G TK+LALE A+++ Sbjct: 111 FNMSRNVIEGM-RERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKN 169 Query: 180 ITVNCVAPGLIETDMTEEAP---VEEILKLIPARRAGKPEEVAAAVAYLMSPDAAYVTRQ 236 ITVN +APG +TDM P +E+I+ IP G ++A V +L + ++T Sbjct: 170 ITVNAIAPGYCDTDMVSAIPQEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGA 229 Query: 237 VISVNGG 243 VNGG Sbjct: 230 TFDVNGG 236 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 91.3 bits (225), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 23/262 (8%) Query: 2 TTSGEHSIFVTGSSRGIGRAIALRLAREGYDIVLHCHSRREAAEQVAAEIASL----GRK 57 TT + +TGS+ GIG IA LA++G IVL+ A ++AA A L G + Sbjct: 4 TTLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGD---ANEIAALQAGLTQDYGVQ 60 Query: 58 TRVLQFDVAQREAASQVLLEDIEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLD 117 + D+++ + + ++ + G +V NAGI P E WD+++ NL Sbjct: 61 STYHPADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLS 120 Query: 118 GFYNVLNPLVMPMVRRRAPGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAK 177 ++ L +P ++ + GRI+ +AS GL+G+ + Y AAK G++G +K ALE A+ Sbjct: 121 SAFHTTR-LALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQ 179 Query: 178 RDITVNCVAPGLIETDMTEE-----APVEEILK-------LIPARRAGK---PEEVAAAV 222 +T N + PG + T + ++ A E++ L + +G+ PE++ A Sbjct: 180 TGVTCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTPEQLGALA 239 Query: 223 AYLMSPDAAYVTRQVISVNGGL 244 +L S A V S++GG Sbjct: 240 VFLCSEAANQVRGAAWSMDGGW 261 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 454,175 Number of extensions: 18118 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 12 Length of query: 245 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 166 Effective length of database: 740,042 Effective search space: 122846972 Effective search space used: 122846972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)