BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3621.p
         (803 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096027|ref|YP_001101102.1| hypothetical protein HEAR2867 [...   107   3e-24

>gi|134096027|ref|YP_001101102.1| hypothetical protein HEAR2867
           [Herminiimonas arsenicoxydans]
          Length = 656

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 166/645 (25%), Positives = 277/645 (42%), Gaps = 64/645 (9%)

Query: 194 RDGVSYVLLLLELKAPAFSMQAQEQVVPLLARARQAA----------LAHADQVRTGGVV 243
           +DG    LLL + +A       QE  +  +    +AA          LAHA  V TG  V
Sbjct: 24  KDG-KRALLLAQTRALGSDTDGQETAINHIKEKFEAAKGELAGTLPQLAHAKLVMTGPGV 82

Query: 244 LHAAAASAQAGSESATIGAGSLVGILLLMWLSFRSLKPILYIATSIAVGCL-GALSVSMW 302
               A +     E+      S   I++L+++ +RS   ++     +  G L G ++VS+ 
Sbjct: 83  FGVNARNTIT-QEATMFSLISATLIMILLFIVYRSGAAVVLGLAPVLSGVLAGTVAVSLG 141

Query: 303 LFGQIHLLTLVFGASLIGIAQDYGIYFLCARLAAPAELDSPTLLRRLLPGLALMLLAAVI 362
            FG +H LTL FG +LIG A DY IY      +A    +S    ++  P + L +L ++ 
Sbjct: 142 -FGTVHGLTLGFGTTLIGEAIDYSIYLFIQSGSAK---NSADWAKKSWPTIRLGVLTSMA 197

Query: 363 GYLGMAATPFPGLQQMAVFSALGLLFAWLTVACWFPQLIGPHSLRATPLAQ--RFGQSIL 420
           G+  +  + FPGL Q+ +++  GL  A        P L+ P       L     F Q  L
Sbjct: 198 GFGCLLFSGFPGLAQLGLYTIAGLTSAAFVTRFVLPSLL-PRDFVVRDLTDIGLFVQKSL 256

Query: 421 RWPNLLGGLAWHLVLPTAAALVGLAATGITRLHS-SDDLRALQ--KSPPQLLQDQIRISQ 477
               LL    + +VL   A L       + R H    +L AL       Q L +++R   
Sbjct: 257 HRLQLLRKGFFLIVLAACAVL------WVNRDHLWEPELSALSPVSKADQNLDEKLR--- 307

Query: 478 LLDMAAPVQFYL--VRGESAEAVLQQEEALRSKLQPLLDRQIINGVQALSNWVPSQRRQQ 535
             ++ AP   YL  V+  + EAVLQ  E + ++L  ++D   +   +  S ++PS   QQ
Sbjct: 308 -KEVGAPDVRYLIVVKENNLEAVLQSTEKVSAQLNSMVDAGTLAAFETPSRYLPSLATQQ 366

Query: 536 DNLA------LLRQALLEPRGETPDPVTLTARAIEESPAWAQALRQRLLDKAHPITPEEF 589
             LA      +L+Q + +     P    L A  +      A+   Q    KA  +T +  
Sbjct: 367 ARLAALPPSDVLQQRINQAVNGLPFQARLLAPFVSSVGELAKIAGQPEELKARLLTRQSL 426

Query: 590 LATPAGAASRHLWLGRVGGSYASIVALRGLTDYRQLDQ-LAAAAAGLKGVQWVDKVGEIS 648
             T    A+  L + R  G  ++++ L    D R +D  L   A    GVQ    +   +
Sbjct: 427 AGTSMALATDSLLIER-NGETSALIPLTAAGD-RPIDTALIRQALQQSGVQHAYFIDLKT 484

Query: 649 SVLRYYRIYMGWALLAAYAGIFA---LLSWRYRGRA--WRALAPPLLASFLTLGLFGWLG 703
              + Y  YM  A+L A  G+FA   LL +  R  +   R + P + A      +    G
Sbjct: 485 ETGKLYSGYMQEAILLALCGLFAMTVLLGFNLRSLSALTRVMVPLITAVLAVAAILALTG 544

Query: 704 QPLQLFHVLAGLLVLGLGVDYGIF---------------LLESSPRQRPHAWLTVGLSAA 748
           Q + + H++  LL++ +G +Y +F               ++ S P+ RP    ++  +  
Sbjct: 545 QRMTILHLIGLLLIVAVGSNYALFFAQPPTVPVKNPLTGVVTSMPQIRPSTLASLIFANI 604

Query: 749 SALLSFGLLALSHSPPLHAFGLTMLCAMLLVWLLAPLFTHPGQGA 793
           + ++ FG+L+ S  P L+A G+T+   ++L  + A +F+   Q A
Sbjct: 605 TTVIGFGVLSFSSVPVLNAIGITVGIGVILALVFAAIFSSSKQAA 649


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,400,103
Number of extensions: 52801
Number of successful extensions: 210
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 1
Length of query: 803
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 714
Effective length of database: 707,092
Effective search space: 504863688
Effective search space used: 504863688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)