BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3615.p
         (586 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096024|ref|YP_001101099.1| 4-coumarate--CoA ligase [Hermin...   119   5e-28
gi|134094157|ref|YP_001099232.1| acetyl-CoA synthetase [Herminii...    61   2e-10

>gi|134096024|ref|YP_001101099.1| 4-coumarate--CoA ligase
           [Herminiimonas arsenicoxydans]
          Length = 483

 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 136/485 (28%), Positives = 197/485 (40%), Gaps = 67/485 (13%)

Query: 22  RVIGWRDGEAVTHAAWRCELLRWKQLLQETPGQRFALFH-HDTLHFAAALFAAWLAGKTT 80
           R++ WRDG  VT A +  ++ +   +L   P  R  L   HD  HF  AL A  +AGK  
Sbjct: 33  RIVAWRDGIPVTAAQFLSDVEKLATIL---PASRHILNDCHDRYHFLVALSAILVAGKVN 89

Query: 81  YLPSDALPETCRQLQGEV-DGFLGQFGSHCPALHPTEDAPHEQ----------EAAPWPA 129
            LPS    ET RQL     D       S+C    P    P              A   P 
Sbjct: 90  LLPSTRTAETIRQLLSFAPDAVCLTDQSNCAIALPQTAYPSPTFFGQIGSASIRAFNIPQ 149

Query: 130 LRGDFPALVVYTSGSTGAAQAIPKQLAQMANEVATLETLFGARLG-QADIISTVSHQHIY 188
           +  D     V+TSGSTG   A  K  A +   V       G   G    ++ TV  QH+Y
Sbjct: 150 IEEDRLVAYVFTSGSTGLPIAHRKTWATLVCNVQMEARQLGLEPGVNYSVVGTVPAQHMY 209

Query: 189 GLLFKVLWALCAGRPIQAGSAFFPEDLQRLVGQ--RPWVLLSSPAHLKRLPEQATQPEVT 246
           G    VL  L  G  + +  +F+P D+   + Q   P VL+++P HL+ L   A    + 
Sbjct: 210 GFESTVLMPLANGFSLTSAQSFYPADICHSLAQVPEPRVLITTPVHLRSLLGSAL--PLP 267

Query: 247 QLRAIFSSGGPLPAEAARDTALTLGQRPLEIYGSSETGGIAWRQPESDPALRREHWQVMP 306
           ++  + S+  PL  + A+           EIYGS+ETG IA RQP   P      W + P
Sbjct: 268 KIEVMVSATAPLSPQLAQQAEQAFHAPLQEIYGSTETGQIATRQPSLTP-----EWVLFP 322

Query: 307 GVEV-----------RIGASGELEVRSPHLPDRSWFGLADRAVLVEEIAGAFELRGRSDR 355
            +++           R+  SG   V +P +P      L           G F L GR   
Sbjct: 323 TLKMAPCPEQDKNDSRMWISGG-HVETP-MPMNDAIELTSN--------GKFLLHGRITD 372

Query: 356 IVKLEEKRISLTRIEQLLAASPLVAEVRVIVHQGRRARQFIAAFVVPSASGRALLQAQGK 415
           ++ +  KR SL  +   L A P + +               A F+ P  +   + + +  
Sbjct: 373 LINIAGKRSSLAYLNHHLNAIPGIVDG--------------AFFMPPEKTSGEVTRLKAV 418

Query: 416 L---TLN-GALKSVLAGAIEAIALPRLWRYLDAMPVNAQGKLTLSALTAL---LENPPPS 468
           +   TL  G + + L   I+   +PR    +D++P NA GKL  +AL      L N   S
Sbjct: 419 VVAPTLEVGDIIAALREKIDPAFMPRPLYKVDSLPRNATGKLPHAALAEFMNTLSNEHSS 478

Query: 469 AARAP 473
           + R P
Sbjct: 479 SERKP 483


>gi|134094157|ref|YP_001099232.1| acetyl-CoA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 660

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 160/393 (40%), Gaps = 57/393 (14%)

Query: 122 QEAAPWPALRGDFPALVVYTSGSTGAAQAIPKQLA-QMANEVATLETLFGARLGQ----- 175
            E AP P +  + P  ++YTSGSTG  + +    A  +   + T++ +F  +        
Sbjct: 252 SECAPEP-VGAEHPLFILYTSGSTGKPKGVQHSSAGYLLWAMLTMKWVFDIKPNDVYWCT 310

Query: 176 ADIISTVSHQHI-YG-LLFKVLWALCAGRPIQAGSAFFPEDLQRLVGQRPWVLLSSPAHL 233
           ADI     H ++ YG L       +  G P+   +  F E +Q+    +  +  ++P  +
Sbjct: 311 ADIGWVTGHTYVTYGPLAVGATQIVFEGVPMYPNAGRFWEMVQK---HKVSIFYTAPTAI 367

Query: 234 KRLPEQA-----TQP---EVTQLRAIFSSGGPLPAEAARDTALTLGQRP---LEIYGSSE 282
           + L + A     T P   +++ LR + S G P+  EA       +G      ++ +  +E
Sbjct: 368 RSLIKAAEADPSTHPSKYDLSSLRLLGSVGEPINPEAWMWYYKNIGGERCPIVDTFWQTE 427

Query: 283 TGG-IAWRQPESDPALRREHWQVMPGVEVRI----------GASGELEVRSP-------- 323
           TGG +    P + P +       +PG+   +          G  G L ++ P        
Sbjct: 428 TGGHVISPLPGATPMVPGSCTLPLPGIIAAVVDDGGHDLPNGKGGLLVIKRPWPAMIRNI 487

Query: 324 -HLPDR---SWF--------GLADRAVLVEEIAGAFELRGRSDRIVKLEEKRISLTRIEQ 371
            + P+R   S+F         LA    +  E  G F + GR D ++ +   R+    IE 
Sbjct: 488 WNDPERFEKSYFPHELGGRTYLAGDGAIRNEETGYFTITGRIDDVLNISGHRMGTAEIES 547

Query: 372 LLAASPLVAEVRVIVHQGRRARQFIAAFVVPSASGRALLQAQGKLTLNGALKSVLAGAIE 431
            L A+P+VAE  V+        + I AFVV     R   +      +   L+  +A  I 
Sbjct: 548 ALVANPMVAEAAVVGKPDETTGESICAFVVLK---RVRPEGDEAKQIAKELRDWVAKEIG 604

Query: 432 AIALPRLWRYLDAMPVNAQGKLTLSALTALLEN 464
            IA P+  R+ D +P    GK+    L  L ++
Sbjct: 605 PIAKPKEIRFGDNLPKTRSGKIMRRLLRVLAKD 637


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,112,022
Number of extensions: 46729
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 586
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 499
Effective length of database: 713,682
Effective search space: 356127318
Effective search space used: 356127318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)