BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3609.p (523 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 327 7e-91 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 315 5e-87 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 301 4e-83 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 286 2e-78 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 265 4e-72 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 327 bits (839), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 212/513 (41%), Positives = 313/513 (61%), Gaps = 8/513 (1%) Query: 4 LHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWRENI 63 L +G RL + + +++ LM M ++ + +L+ V +A +L EE + LA++W + I Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKAT-VLMEEATIKERLAQQWIKGI 61 Query: 64 VVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAILQRMGEER 123 N R A T++ K +M+ + ++ Q L + EGK +L + E+R Sbjct: 62 ETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKR 121 Query: 124 KRYLVVRQKL----EEVGADAATRAQLVQDMQSIATAYIKQGTNLVHYQEKRTHELGGEI 179 Y +R + E GA+ + + M+ A AYI+ +V+ Q + G + Sbjct: 122 ATYTAIRDDVMNLREARGAE--LQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAKGRV 179 Query: 180 DAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLTASVPAAQ 239 D +R++L+ ++ I+L W+LTRSI PL ++ +A+GDLT + Sbjct: 180 DTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRI-TVD 238 Query: 240 GRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQAASSLEQ 299 + E LL + +M +SL + +++ R ++ AS++ A+GN DLS+RTE+ ASSLE+ Sbjct: 239 SKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEE 298 Query: 300 TASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEASRRIADI 359 TAS+ME++ ST +Q+A+ AR AN AS VA++GG V+ VV TM+ I+ ++R+I DI Sbjct: 299 TASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDI 358 Query: 360 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKDLINAS 419 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA+EIK LI+ S Sbjct: 359 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDS 418 Query: 420 MSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAISQLEQAT 479 + V G LV +AG + +VV +V V +AEI A++EQS GI +VN AI Q++Q T Sbjct: 419 VDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVT 478 Query: 480 QQNAALVEQTTSATLQLNQQAVVLAEVISDFKL 512 QQNAALVE+ +A LN+QA LA+ +S FKL Sbjct: 479 QQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 315 bits (806), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 217/515 (42%), Positives = 312/515 (60%), Gaps = 8/515 (1%) Query: 4 LHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWRENI 63 + L +G RL L +AV++ LM +M+++ + +L+ V QA + EE AE+ L+ +W Sbjct: 3 ITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQAT-VRMEEAAEQERLSIQWHAGN 61 Query: 64 VVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAILQRMGEER 123 N R A + N + + F ++M T++Q + L +EEGK ++ +G++R Sbjct: 62 SANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGDKR 121 Query: 124 KRYLVVRQKLEEVGADAATRAQ------LVQDMQSIATAYIKQGTNLVHYQEKRTHELGG 177 Y+ +R+++ ++ AD + A+ + M Y K ++V +Q+ E Sbjct: 122 TVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFLEAKT 181 Query: 178 EIDAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLTASVPA 237 E+D R+ LL A ++ + LL WLL+RSI PL + +A GDL + Sbjct: 182 EVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRNRIEV 241 Query: 238 AQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQAASSL 297 E LL + +M + L VS+ R ++ AS++ AAGN DLS+RTE+ ASSL Sbjct: 242 -NSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQASSL 300 Query: 298 EQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEASRRIA 357 E+TAS+ME++ ST +Q+A+ AR AN AS VA++GG V+ VV TM I+ ++++I Sbjct: 301 EETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAKKIV 360 Query: 358 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKDLIN 417 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AA+EIK LI Sbjct: 361 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIG 420 Query: 418 ASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAISQLEQ 477 S+ V G LV +AG + +VV +V V ++EI A++EQS GI +VN AI Q++Q Sbjct: 421 DSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQ 480 Query: 478 ATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKL 512 TQQNAALVE+ +A LN+QA LAE +S FKL Sbjct: 481 VTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 301 bits (772), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 198/460 (43%), Positives = 277/460 (60%), Gaps = 3/460 (0%) Query: 56 AKEWRENIVVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAI 115 A+ W VN +R LAL ++ +FF + K+ TEIQK + +++ K + Sbjct: 55 AQNWLLGTSVNASRTLALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKEL 114 Query: 116 LQRMGEERKRYLVVRQKLEEV--GADAATRAQLVQ-DMQSIATAYIKQGTNLVHYQEKRT 172 + ++R Y+ +R+ + V G + A Q++ M AY+ N++ + E Sbjct: 115 FAEVAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEV 174 Query: 173 HELGGEIDAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLT 232 I R+ L+ +I+ L+ W LT I PLHE + +A GDLT Sbjct: 175 KLADESITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLT 234 Query: 233 ASVPAAQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQ 292 A A+ + E LL+ +G MQ +L V++ R ++ ASSE A+GN DLS+RTEQ Sbjct: 235 ARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQ 294 Query: 293 AASSLEQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEA 352 ASSLE+TAS+ME++ ST +Q+A+ +R AN AS VA +GG V+ VV TM I+ + Sbjct: 295 QASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNS 354 Query: 353 SRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREI 412 +++I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AA+EI Sbjct: 355 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEI 414 Query: 413 KDLINASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAI 472 K LI S+ V G LV +AG + ++V V V +AEI+ A++EQS GI +VN A+ Sbjct: 415 KTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAV 474 Query: 473 SQLEQATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKL 512 SQ++Q TQQNAALVE+ +A L QA LAE +S F++ Sbjct: 475 SQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 286 bits (731), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 191/427 (44%), Positives = 264/427 (61%), Gaps = 14/427 (3%) Query: 101 KRYTELD-QTEEGKAILQRMGEERKRYLVVRQKLEEVGADAATRAQ--------LVQDMQ 151 K+Y L +T E + + + +R RYL K E G AA RA LV M Sbjct: 99 KKYLSLPIETLEERKVADEVTAKRIRYL----KEAEQGLIAALRAGRNEEVEDILVNKMP 154 Query: 152 SIATAYIKQGTNLVHYQEKRTHELGGEIDAALDRSRLVLLGATAASIVCAILLGWLLTRS 211 + + K LV Q K + R++ + ++ + + L R+ Sbjct: 155 PLFQSLTKSTDELVELQMKSAATGYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRA 214 Query: 212 IAAPLHEMQTLTLRIAAGDLTASVPAAQGRSELAALLNNVGNMQESLRSLVSKSRQAAMS 271 I PL EM IA+GDLT+++ + R+E+ L+ + MQ+ L V++ R+ +M+ Sbjct: 215 ITGPLKEMLLHFDTIASGDLTSNIEV-KSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMA 273 Query: 272 VNQASSEAAAGNSDLSARTEQAASSLEQTASAMEQIASTAQQSAEFARSANHQVSKASDV 331 ++ A++E AAGN DLS+RTEQ A+SLE+TAS+ME++ ST +Q+ + AR AN + AS V Sbjct: 274 ISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAV 333 Query: 332 AQQGGQVMGDVVQTMNRIDEASRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 391 A +GG V+ DVV TM+ I+ ++R+I DII VIDGIAFQTNILALNAAVEAARAGEQGRGF Sbjct: 334 AVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF 393 Query: 392 AVVASEVRTLAQRSATAAREIKDLINASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTI 451 AVVASEVR+LAQRSA AA+EIK LI+ S++ V G LV +AG + +VV +V V + Sbjct: 394 AVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIM 453 Query: 452 AEISVAAEEQSRGIGEVNAAISQLEQATQQNAALVEQTTSATLQLNQQAVVLAEVISDFK 511 +EI A++EQS GI +VN AI Q+++ TQQNAALVEQ +A L QA L+ V+S FK Sbjct: 454 SEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFK 513 Query: 512 LPLEHSA 518 L SA Sbjct: 514 LQGHQSA 520 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 265 bits (677), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 168/328 (51%), Positives = 227/328 (69%), Gaps = 11/328 (3%) Query: 190 LLGATAASIVCAILLGWLLTRSIAA-----PLHEMQTLTLRIAAGDLTASVPAAQGRSEL 244 +LGA A V A LLG+LL RS+ A P + Q + RIA GDL+A++ +G + Sbjct: 192 VLGAGA---VAATLLGFLLVRSVYAQLGGEPQYAAQ-IVRRIAGGDLSATIITRKG--DR 245 Query: 245 AALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQAASSLEQTASAM 304 +LL + +MQ++L V R+A+ ++ AS + AAGN DLSARTEQ ASSLE+TAS+M Sbjct: 246 NSLLAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSM 305 Query: 305 EQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEASRRIADIISVID 364 E++ +T +Q+A A+ AN ASD+A QG V+ VV TM+ I ++ RI DII VI+ Sbjct: 306 EELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVIN 365 Query: 365 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKDLINASMSAVG 424 GIAFQTNILALNAAVEAAR GEQGRGFAVVA+EVR+LAQRSA AA+EIK LI+ S+ VG Sbjct: 366 GIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVG 425 Query: 425 GGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAISQLEQATQQNAA 484 G +LV+ AG + ++V ++ V + EI+ A+ EQ+ GI +VN AI Q+++ TQQNAA Sbjct: 426 AGATLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAA 485 Query: 485 LVEQTTSATLQLNQQAVVLAEVISDFKL 512 LVE+ +A L +QA L +V+S FKL Sbjct: 486 LVEEAAAAAGSLQEQACSLVQVVSVFKL 513 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.126 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 685,187 Number of extensions: 22528 Number of successful extensions: 249 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 14 Length of query: 523 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 437 Effective length of database: 716,977 Effective search space: 313318949 Effective search space used: 313318949 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)