BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3607.p
         (218 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095753|ref|YP_001100828.1| phosphoglycolate phosphatase 2 ...   281   2e-77
gi|134093489|ref|YP_001098564.1| putative phosphoglycolate phosp...    68   3e-13

>gi|134095753|ref|YP_001100828.1| phosphoglycolate phosphatase 2
           [Herminiimonas arsenicoxydans]
          Length = 221

 Score =  281 bits (719), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/217 (65%), Positives = 159/217 (73%)

Query: 1   MPLRPPRAILFDLDGTLADTAPDLAAAANFLRHERGLENAPYENLRPVASAGARGLIGAA 60
           M L  P AILFDLDGTLADTAPDLA A N LR  RGL  A Y  LRPVASAGARGLIG A
Sbjct: 1   MKLPTPLAILFDLDGTLADTAPDLAEAVNQLRVTRGLAPADYALLRPVASAGARGLIGVA 60

Query: 61  LGIHPGDEEYEALRVRFLDRYQANMTTHSRLFDGIPELLAQLEARGIAWGIVTNKAARFT 120
            GI P D EY  LR  FL  Y A +  +SRLF+G+ ELL+ L+ + IAWGIVTNKAA+ T
Sbjct: 61  FGITPQDAEYAELRDNFLRNYAAAIAVNSRLFEGVSELLSNLQEKNIAWGIVTNKAAQLT 120

Query: 121 DVLAPQIGLGHAGCIVSGDTTPHSKPHPAPLLEAARRLQLPAADCWYVGDDLRDIQAGRA 180
           D L PQIGL HA C++SGDTT H KPHPAPL EAA+R+ +    CWYVGDDLRDIQAG+A
Sbjct: 121 DQLVPQIGLHHAACVISGDTTAHPKPHPAPLFEAAKRIGVQPEHCWYVGDDLRDIQAGQA 180

Query: 181 ADMPTIAAAWGYCGHTEPAGWQADALLHEPLQILTLL 217
           A M TIAAAWGYCG   PA W ADAL+  P Q+  LL
Sbjct: 181 AGMTTIAAAWGYCGEVAPATWNADALVESPQQLFDLL 217


>gi|134093489|ref|YP_001098564.1| putative phosphoglycolate
           phosphatase (PGP) (gph) [Herminiimonas arsenicoxydans]
          Length = 209

 Score = 68.2 bits (165), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 20  TAPDLAAAANFLRHERGLENAPYENLRPVASAGARGLIGAALGIHPGDEE----YEALRV 75
           TA DL  A N +R   GL +   +        GA  L+  ++G+     E    ++   V
Sbjct: 4   TAQDLHIAVNRMREGLGLASLDLDTAISFVGKGAENLVRKSIGVDFSASEVELRFQEAMV 63

Query: 76  RFLDRYQANMTTHSRLFDGIPELLAQLEARGIAWGIVTNKAARFTDVLAPQIGL-GHAGC 134
            F   Y       +  + G+ E L +++A+G+    VTNK   FT  L  + GL  +   
Sbjct: 64  LFEKHYFDVNGEFASAYPGVHEGLQEMQAKGLRLACVTNKPIAFTLPLMKKTGLHDYFEI 123

Query: 135 IVSGDTTPHSKPHPAPLLEAARRLQLPAADCWYVGDDLRDIQAGRAADMPTIAAAWGY 192
           I  GD+    KP P  LL+     +L  A    +GD + D +A RAA    +   +GY
Sbjct: 124 IYGGDSFAKRKPDPMQLLQVCADFKLAPAQIVAIGDSINDSKAARAAGCKVLNVPYGY 181


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 395,163
Number of extensions: 15142
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 140
Effective length of database: 743,337
Effective search space: 104067180
Effective search space used: 104067180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)