BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3606.p
         (238 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095752|ref|YP_001100827.1| bifunctional 3-demethylubiquino...   387   e-109

>gi|134095752|ref|YP_001100827.1| bifunctional
           3-demethylubiquinone-9
           3-methyltransferase/2-octaprenyl-6-hydroxy phenol
           methylase [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  387 bits (995), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/231 (80%), Positives = 212/231 (91%)

Query: 8   MNADPQEIQKFSELAHRWWDPGSEFRPLHEINPLRLEWINARAPLAGKKVIDIGCGGGIL 67
           MNADP E++KFS+LAH+WWDP SEFRPLHEINPLRLEWIN+ APLA K VIDIGCGGGIL
Sbjct: 1   MNADPLELKKFSDLAHQWWDPTSEFRPLHEINPLRLEWINSLAPLAAKTVIDIGCGGGIL 60

Query: 68  AESMARKGADVTGIDLSDKALKVADLHSMESGVQVRYEKIAAEDMAAREAGQYDVVTCME 127
           +ESMARKGA+VTGIDLS+KALKVADLHS+ESGVQVRYE IAAEDMAAREAG++D+VTCME
Sbjct: 61  SESMARKGANVTGIDLSEKALKVADLHSLESGVQVRYELIAAEDMAAREAGKFDIVTCME 120

Query: 128 MLEHVPDPAAIVRAAATLAKPGGKLFFSTLNRNMKSYLMAIIGAEYVLRLLPKGTHDYAK 187
           MLEHVPDPAAIV AAA LAKPGG +FFST+NRN K+YL A++GAEY+LRLLPKGTHDYAK
Sbjct: 121 MLEHVPDPAAIVAAAAKLAKPGGTIFFSTINRNPKAYLHAVLGAEYLLRLLPKGTHDYAK 180

Query: 188 FITPAELAHYTREAGLQIDAFKGMGYNPLTKIYSLNEDTSVNYLMACTKLA 238
           FITPAEL+ + REAGL +D  +GMG+NPLTKIYSL  DTSVNYL+AC+K A
Sbjct: 181 FITPAELSRFAREAGLTVDTLRGMGFNPLTKIYSLTHDTSVNYLVACSKPA 231


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 463,184
Number of extensions: 19563
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 159
Effective length of database: 740,042
Effective search space: 117666678
Effective search space used: 117666678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)