BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3605.p
         (204 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095751|ref|YP_001100826.1| putative outer membrane protein...   207   2e-55
gi|134095750|ref|YP_001100825.1| putative OmpA family protein [H...   101   3e-23
gi|134094293|ref|YP_001099368.1| putative outer membrane protein...    78   3e-16

>gi|134095751|ref|YP_001100826.1| putative outer membrane protein 3a
           (II*;G;d) [Herminiimonas arsenicoxydans]
          Length = 205

 Score =  207 bits (528), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 154/208 (74%), Gaps = 7/208 (3%)

Query: 1   MNKLAKLVFAAASAAIALSATAQETKDIKV-RPGSLYLQDGRDVVTRSGYGLCWQTAF-- 57
           MNKLAKLVFAA++     + +AQ   DI+   P S Y Q G   + RSG GLCW T +  
Sbjct: 1   MNKLAKLVFAASAVV---AMSAQAQTDIQAPTPNSAYAQAGNGTIVRSGTGLCWHTGYWT 57

Query: 58  -ANGPCEEPPAPAPVAAAAPAPAPAPVAAPTSEKVTYAADAFFDFDKATLKPAGKAKLDE 116
            A+       A    AA APA APA    PTSEKVT+AADAFFDFDKA LKP GKAKLD+
Sbjct: 58  PADSVAGCDGALVAAAAPAPAAAPAAAPVPTSEKVTFAADAFFDFDKAVLKPDGKAKLDD 117

Query: 117 LVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGK 176
           L S LK +NLEVIIAVGHTDSIGS AYNQKLS+RRAE+VK YLV KG++A RVYTEGKG+
Sbjct: 118 LASKLKDLNLEVIIAVGHTDSIGSDAYNQKLSIRRAEAVKGYLVGKGIDAKRVYTEGKGE 177

Query: 177 SQPVADNKTAAGRAKNRRVEIEVVGTRK 204
            QPVA NKTAAGRA+NRRVEIEVVGTRK
Sbjct: 178 KQPVATNKTAAGRAQNRRVEIEVVGTRK 205


>gi|134095750|ref|YP_001100825.1| putative OmpA family protein
           [Herminiimonas arsenicoxydans]
          Length = 225

 Score =  101 bits (251), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 115/229 (50%), Gaps = 36/229 (15%)

Query: 1   MNKLAKLVFAAASAAIALSATAQETKDIKVRPGSLYLQDGRDVVTRSGYGLCWQTAFANG 60
           +NKLA ++    + + A    AQ + DI+      Y QDGR  +TRS YGLCW++ F   
Sbjct: 2   INKLALVLLVGVAPSYA---AAQSSTDIQAPSNHSYNQDGRGTITRSDYGLCWRSGFWTP 58

Query: 61  PCEEPPAPAPVAAAAPAPAP-APVAAPTSEK----------------VTYAADAFFDFDK 103
             ++  A    A A+P P P AP  A + EK                +  A+D  F F+K
Sbjct: 59  --DDAVAGCDGALASPIPNPTAPEMANSLEKERQSMPLAAKPLCNVTLALASDQTFAFNK 116

Query: 104 ATLKPAGKAKLDE----LVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYL 159
           A L  A K ++D+    +++  K I  + I   GHTD +G+   NQ LS +RA SV  YL
Sbjct: 117 AVLNKAAKQQIDQKVLPILAECKGI--DGITITGHTDHLGASRSNQILSEKRAASVAGYL 174

Query: 160 VSKGVEANRVYTEGKGKSQPV--ADNKTAAGR-----AKNRRVEIEVVG 201
            +KGV + ++   G G++Q V   D K   G+     A NRRV IEV G
Sbjct: 175 KTKGV-STKMNVLGAGETQGVKLCDEKLPHGKLIACLAPNRRVLIEVHG 222


>gi|134094293|ref|YP_001099368.1| putative outer membrane protein;
           putative peptidoglycan-associated (lipo)-protein
           [Herminiimonas arsenicoxydans]
          Length = 225

 Score = 78.2 bits (191), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 59/110 (53%)

Query: 90  KVTYAADAFFDFDKATLKPAGKAKLDELVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSV 149
           K+   +D  F   ++ +  + +  LD   + L       +  +GHTDS GS A N  LS 
Sbjct: 101 KLDIPSDISFATGRSDINSSFRPILDRFATGLVDNPAATVTIIGHTDSTGSDAINNPLSF 160

Query: 150 RRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 199
            RA   + YL  +GV   R++ +G+G  +PVA N   AGRA+NRRVEI V
Sbjct: 161 DRASRTRDYLAGRGVAPQRIHVDGRGSREPVASNANEAGRARNRRVEIYV 210


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 254,583
Number of extensions: 7176
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 4
Length of query: 204
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 127
Effective length of database: 746,632
Effective search space: 94822264
Effective search space used: 94822264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)