BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3602.p
         (357 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095747|ref|YP_001100822.1| bifunctional chorismate mutase/...   606   e-175

>gi|134095747|ref|YP_001100822.1| bifunctional chorismate
           mutase/prephenate dehydratase P-protein [Herminiimonas
           arsenicoxydans]
          Length = 358

 Score =  606 bits (1562), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/356 (84%), Positives = 323/356 (90%)

Query: 2   SDDKLLPLRQKIDAIDAQILDLLNQRARVAQEVGHVKAETNAPVFRPEREAQVLRRAADR 61
           +DDKL PLR++IDAIDAQILDLLN+RARVAQEVGHVKAETNAPVFRPEREAQVLR  A+R
Sbjct: 3   TDDKLKPLREQIDAIDAQILDLLNRRARVAQEVGHVKAETNAPVFRPEREAQVLRSVAER 62

Query: 62  NPGPLLGTDIQTIFREVMSACRALEKRVTVAYLGPEGTFSEQAVYQQFGHAISGLPCVSI 121
           NPGPLL TDIQT+FREVMSACRALEKRVTVAYLGP GTFSEQAVYQQFG A+ G+PCVSI
Sbjct: 63  NPGPLLDTDIQTVFREVMSACRALEKRVTVAYLGPAGTFSEQAVYQQFGRAVEGMPCVSI 122

Query: 122 DEVFRDAEAGTADFGVVPIENSSEGVINRTLDLLLQTTLTISGEVAIPVHHSLMTASGKM 181
           DEVFR  EAGTADFGVVPIENSSEGVINRTLDLLLQTTLTISGEV+I V+HSLMT SG M
Sbjct: 123 DEVFRATEAGTADFGVVPIENSSEGVINRTLDLLLQTTLTISGEVSIQVNHSLMTRSGNM 182

Query: 182 EGITRICAHSQALAQCNAWLNMNYPAIERQAVASNAEAARMAGEDNSVAAIAGEIAGQKY 241
            GI  ICAHSQALAQC  WLN NYP IER+AVASN EAAR+AGED +VAAIA EIAGQKY
Sbjct: 183 SGINSICAHSQALAQCQVWLNQNYPNIERRAVASNGEAARLAGEDATVAAIASEIAGQKY 242

Query: 242 SLQTVNAHIQDDPHNRTRFAVIGRLRTAPSGRDQTSIVLSVPNKAGAVYNLLAPLARHGV 301
           +LQ V AHIQDDPHNRTRFAV+GRL TA SG+DQTS+VLSVPNKAGAVYNLLAPLA+HGV
Sbjct: 243 NLQVVKAHIQDDPHNRTRFAVVGRLHTAASGKDQTSLVLSVPNKAGAVYNLLAPLAKHGV 302

Query: 302 SMTRFESRPARMGAWEYYFYVDLEGHEQDEKVAKALEELRQNAAFFKLLGSYPLGL 357
           SMTRFESRPARMG WEYYFYVD+EGH +D KVA AL+EL+ NAAFFK+LGSYP  L
Sbjct: 303 SMTRFESRPARMGTWEYYFYVDVEGHLKDSKVADALKELKDNAAFFKVLGSYPFSL 358


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 640,059
Number of extensions: 24988
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 274
Effective length of database: 726,862
Effective search space: 199160188
Effective search space used: 199160188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)