BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3601.p
         (295 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095745|ref|YP_001100820.1| prephenate dehydrogenase [Hermi...   394   e-111

>gi|134095745|ref|YP_001100820.1| prephenate dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 300

 Score =  394 bits (1012), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/291 (66%), Positives = 234/291 (80%)

Query: 1   VFKKVVIFGVGLIGGSFALALRRAGQVAHIVGVGRSVQSLERARELGIIDAFATDVAAAV 60
           + KK+VIFGVGLIGGSFALALR+AG V  +VG+GRS  SL RA+ELGIID   T +  A+
Sbjct: 1   MLKKIVIFGVGLIGGSFALALRKAGAVEQVVGLGRSTASLLRAKELGIIDVIGTSLEEAL 60

Query: 61  AGADLILVAAPVAQTESILASIAPHLGEQAIVTDAGSTKSDVVASARKALGARIAQFIPA 120
             ADL+L+AAPVAQTESILA+I P+L  Q ++TDAGS K +VVA+AR+ALG +I QF+P 
Sbjct: 61  QDADLVLLAAPVAQTESILAAIKPYLQTQTVITDAGSIKVEVVAAARRALGEKIVQFVPG 120

Query: 121 HPIAGREKHGPEAALAELYEGKKVVITALPENTEADVETVAAAWRACGAVIHRLSAQQHD 180
           HPIAG E  GP+AA+  LY G+KVV+T LPENT   +  VA AW+ CGAVIH+L+ + HD
Sbjct: 121 HPIAGLESTGPDAAIDSLYVGRKVVLTPLPENTTEQIALVARAWQQCGAVIHQLTPENHD 180

Query: 181 AVFASVSHLPHVLAFALVDDIAAKPHAETLFQYAASGFRDFTRIAASSPEMWRDITLANR 240
           AVFA+VSHLPH+LAFALVDDIA KPHAE LFQYAASGFRDFTRIAASSPEMWRDI+LAN+
Sbjct: 181 AVFAAVSHLPHLLAFALVDDIARKPHAELLFQYAASGFRDFTRIAASSPEMWRDISLANQ 240

Query: 241 AALLTEVDAYLVQLQGIREMIAAGDGAAIEQVYANAQHARLQWAAAIEAAE 291
            A+LTE+DAY+ QL   R  +AAGDGAA+  ++++AQ AR  W   IEAAE
Sbjct: 241 TAILTELDAYIAQLTRFRGQLAAGDGAAMHAMFSHAQSARQNWQRNIEAAE 291


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 467,164
Number of extensions: 17273
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 214
Effective length of database: 733,452
Effective search space: 156958728
Effective search space used: 156958728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)