BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3598.p
         (585 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095742|ref|YP_001100817.1| 30S ribosomal protein S1 [Hermi...  1076   0.0  
gi|134096173|ref|YP_001101248.1| putative polyribonucleotide nuc...    58   1e-09

>gi|134095742|ref|YP_001100817.1| 30S ribosomal protein S1
           [Herminiimonas arsenicoxydans]
          Length = 559

 Score = 1076 bits (2783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/553 (95%), Positives = 546/553 (98%)

Query: 31  FAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPVEEFKNDNGEVEVNV 90
           FAALFEESL+RQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIP+EEFKNDNGE+EVNV
Sbjct: 4   FAALFEESLTRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPIEEFKNDNGELEVNV 63

Query: 91  GDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVTGTVNGKVKGGLTVLT 150
           GDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIV GTVNGKVKGGLTVLT
Sbjct: 64  GDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVIGTVNGKVKGGLTVLT 123

Query: 151 NGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERAK 210
           NGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEER K
Sbjct: 124 NGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERQK 183

Query: 211 LMETLKEGTVVTGVVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEITAK 270
           LMETLKEGTVVTG+VKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVL+VGQEITAK
Sbjct: 184 LMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEITAK 243

Query: 271 VLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVEQGIEGLV 330
           VLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYG+FVEVEQGIEGLV
Sbjct: 244 VLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGSFVEVEQGIEGLV 303

Query: 331 HVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKPNPWDDFAMSHKKG 390
           HVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCK NPWDDFA++HKKG
Sbjct: 304 HVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKANPWDDFAVTHKKG 363

Query: 391 DKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEEAVRKFKKGDELEAVVLAIDV 450
           DKV+G+IKSITDFGVFIGL GNIDGLVHLSDLSWTE GEEAVR+FKKGDELEA+VLAIDV
Sbjct: 364 DKVRGAIKSITDFGVFIGLAGNIDGLVHLSDLSWTETGEEAVRRFKKGDELEAIVLAIDV 423

Query: 451 ERERVSLGVKQLEGDPFNNFAALNDKGAIVTGTVKSVEPKGAVIQLTDEVEGYLRASEIS 510
           ERERVSLGVKQLEGDPFNNFAA+NDKGA+VTGTVKSVEPKGAVIQL++EVEGYLRASEIS
Sbjct: 424 ERERVSLGVKQLEGDPFNNFAAMNDKGALVTGTVKSVEPKGAVIQLSEEVEGYLRASEIS 483

Query: 511 RDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQEAMQKMSADSNAASGT 570
           RDRVEDAGTHLKVGD+VEA+VIN+DRKAR IQLSIKAKDN ETQEAMQKMS+DSNAASGT
Sbjct: 484 RDRVEDAGTHLKVGDTVEAMVINVDRKARGIQLSIKAKDNVETQEAMQKMSSDSNAASGT 543

Query: 571 TSLGALLKAKLDN 583
           TSLGALLKAKLDN
Sbjct: 544 TSLGALLKAKLDN 556


>gi|134096173|ref|YP_001101248.1| putative polyribonucleotide
           nucleotidyltransferase [Herminiimonas arsenicoxydans]
          Length = 780

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 215 LKEGTVVTGVVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEVLSVGQEITAKVLK 273
           L+   ++ GVV N+  +GAFVD+G   DGL+HI+ L+   V+ P  V+  GQ +  KVL+
Sbjct: 660 LRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLE 719

Query: 274 YDQEKNRVSLGVKQLGDDPWTG 295
            D+++ R++L ++     P  G
Sbjct: 720 VDEKRKRIALTMRLSDAAPVAG 741



 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 306 LFGKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVA-PNKVVQLGDEVEVMVLEIDEE 364
           L G VTN+  +GAFV++    +GLVH+S +  +N  V  P+ VV+ G  V+V VLE+DE+
Sbjct: 666 LEGVVTNVAAFGAFVDIGVHQDGLVHISAL--SNTFVKDPHTVVKAGQVVKVKVLEVDEK 723

Query: 365 RRRISLGMKQCKPNP 379
           R+RI+L M+     P
Sbjct: 724 RKRIALTMRLSDAAP 738


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,015,468
Number of extensions: 40223
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 3
Length of query: 585
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 498
Effective length of database: 713,682
Effective search space: 355413636
Effective search space used: 355413636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)