BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3597.p
         (101 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095741|ref|YP_001100816.1| integration host factor subunit...   196   2e-52
gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta [He...    61   1e-11
gi|134095000|ref|YP_001100075.1| integration host factor subunit...    60   2e-11

>gi|134095741|ref|YP_001100816.1| integration host factor subunit
           beta [Herminiimonas arsenicoxydans]
          Length = 101

 Score =  196 bits (498), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/101 (96%), Positives = 98/101 (97%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSELIARLAERYPQLVAKDADYAVKTILDAM DALATGQRIEIRGFGSFALN RPPRI
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101
           GRNPKSGDKVMVPEKRVPHFKPGK+LRERVDAMVGQPI ED
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKQLRERVDAMVGQPIIED 101


>gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta
          [Herminiimonas arsenicoxydans]
          Length = 90

 Score = 61.2 bits (147), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 1  MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
          M K+ELI  +A     +    A  A+  ++ A+   L     + + GFG+F++ +R  R 
Sbjct: 1  MNKTELIDHIAG-SADISKAAATRALDAVIVAVKTTLKKNGTVTLVGFGTFSVGKRAART 59

Query: 61 GRNPKSGDKVMVPEKRVPHFKPGKELRERVD 91
          GRNP++G+ + +   +VP FKPGK L++ V+
Sbjct: 60 GRNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90


>gi|134095000|ref|YP_001100075.1| integration host factor subunit
           alpha [Herminiimonas arsenicoxydans]
          Length = 151

 Score = 60.1 bits (144), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           +TK+EL   L E+   L  ++A   V+T  D + +AL  G+ +++ GFG+F L  +P R 
Sbjct: 51  LTKAELAELLFEQVG-LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 109

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVD 91
           GRNPK+G+++ +  +RV  F   ++L+  V+
Sbjct: 110 GRNPKTGEEIPITARRVVTFHASQKLKSMVE 140


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 197,341
Number of extensions: 7436
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 1,000,347
Length adjustment: 68
Effective length of query: 33
Effective length of database: 776,287
Effective search space: 25617471
Effective search space used: 25617471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 121 (51.2 bits)