BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3595.p
         (391 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095739|ref|YP_001100814.1| tetratricopeptide repeat protei...   669   0.0  

>gi|134095739|ref|YP_001100814.1| tetratricopeptide repeat protein
           [Herminiimonas arsenicoxydans]
          Length = 391

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/391 (82%), Positives = 349/391 (89%)

Query: 1   MEFEFWWLLGIPVFFGLGWIAARVDINQLLSESRTLPRGYFKGLNFLLNEQPDKAIDAFI 60
           MEFE WWLL IP FF LGWIAARVDI QL+SESRTLPRGYFKGLNFLLNEQPDKAIDAFI
Sbjct: 1   MEFENWWLLAIPAFFTLGWIAARVDIKQLVSESRTLPRGYFKGLNFLLNEQPDKAIDAFI 60

Query: 61  EIVKLDPETVELHFALGNLFRRRGETERAIRVHQNLLARPDLPAEHQGHALYELGQDYLK 120
           EIVKLDPETVELHFALGNLFR RGETERAIRVHQNLLARPDLP EH+ HA YELGQDYL 
Sbjct: 61  EIVKLDPETVELHFALGNLFRGRGETERAIRVHQNLLARPDLPQEHKVHAQYELGQDYLN 120

Query: 121 AGLLDRAEETFNKLIDTPYSAQAGRALLEIYQREKEWERAISAAEILQATGAGGRQREIA 180
           AGLLDRAEETFN L++T YSAQA RALLEIYQREKEW RAI AA  LQ +GAGGRQ+EIA
Sbjct: 121 AGLLDRAEETFNLLVETQYSAQAHRALLEIYQREKEWTRAIEAAGALQESGAGGRQKEIA 180

Query: 181 QFYCELAADELVRTNTEAAMALLEKALAADRKSVRATMLMGDALRAKGDIEGALETWRRV 240
           QFYCELA DELV T+ +AA+ LLEKALAADRK+VRATMLMGDA  AK DIE AL  WRRV
Sbjct: 181 QFYCELAQDELVHTHADAAIVLLEKALAADRKNVRATMLMGDAFLAKDDIEAALLAWRRV 240

Query: 241 EHQSVPHTALVAQRLMDGYIAVGRPQEGINLLRAYLAEAPSIDLLEVAFKAVLDADGIDA 300
           EHQSVPH ALVAQRLMDGY AVGRPQEG+NLL+ YLAEA SIDLLEV F+AVL+ +G+DA
Sbjct: 241 EHQSVPHVALVAQRLMDGYRAVGRPQEGVNLLKFYLAEASSIDLLEVVFQAVLELEGVDA 300

Query: 301 ANVLVSDELRRTPTLLGLDKFLEARMMSAPQSVRPELAVVKTLVHGYTQKLARYQCSHCG 360
           A  +VSDELRRTPTLLGLDK LEAR++ AP  +R EL++VK LVHGYTQKLARYQCS+CG
Sbjct: 301 ATQMVSDELRRTPTLLGLDKLLEARLLDAPPEMRSELSMVKNLVHGYTQKLARYQCSNCG 360

Query: 361 FKARQFYWQCPGCSQWETYPPRRTEELNVMN 391
           FKARQ+YWQCPGCS+WE+YPPRRTEELNVMN
Sbjct: 361 FKARQYYWQCPGCSKWESYPPRRTEELNVMN 391


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 731,897
Number of extensions: 28444
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 307
Effective length of database: 723,567
Effective search space: 222135069
Effective search space used: 222135069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)