BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3591.p (323 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 103 1e-23 gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [... 96 2e-21 gi|134094840|ref|YP_001099915.1| hypothetical protein HEAR1631 [... 95 5e-21 gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [... 94 8e-21 gi|134096466|ref|YP_001101541.1| putative signal peptide [Hermin... 94 1e-20 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 103 bits (256), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 6/181 (3%) Query: 142 AEQQALLKDLAAMVEQELV-AVRMATIDELTGVSNRRGFTTLAQHAMAASKRSARAASLL 200 +EQ+ L +L + +EQE A+ A+ D LTGV NRR F +A +A +KRS + +L Sbjct: 146 SEQEKL--NLISQLEQEKSRALLQASHDYLTGVPNRRLFYEMAATELARAKRSRKLYALF 203 Query: 201 YFDLNHFKQINDRFGHLEGDRALTDFARLLMDNLRESDVIGRLGGDEFVVFLTNTAL-AD 259 + DL+ FK IND GH GD L AR L ++LRE D++ RLGGDEFV+ ++ A +D Sbjct: 204 FLDLDKFKLINDTLGHAVGDLLLQGVARRLRESLREYDLLARLGGDEFVILVSEMASESD 263 Query: 260 STVVLAHLQAAVQD-FNRNGQRPYQLDYCVGVAQYDPARHPDLSALLGSADAAMYERKKA 318 V A L V+D F G + +G+A Y P D+ LL AD AMY K A Sbjct: 264 IARVAAKLVDVVRDPFLDLGGNDIDVSPSIGIALY-PRDGQDVETLLMHADLAMYSAKSA 322 Query: 319 S 319 Sbjct: 323 G 323 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] Length = 475 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%) Query: 168 DELTGVSNRRGFTTLAQHAMAASKRSARAASLLYFDLNHFKQINDRFGHLEGDRALTDFA 227 D LTG NRR F +H A + R S+ + D++HFKQ+ND +GH GD+AL + Sbjct: 311 DVLTGAHNRRYFDEAFKHEFAVASRQGWPLSVAFLDIDHFKQVNDTYGHAAGDKALIALS 370 Query: 228 RLLMDNLRESDVIGRLGGDEFVVFLTNTALADSTVVLAHLQAAVQDF-NRNGQRPYQLDY 286 R++ +R SD+ R GG+EFV+ T ++ +VL ++ AV + + + L Sbjct: 371 RIIATQIRGSDIFVRYGGEEFVLLFPGTVAEEALIVLNRIRQAVASYCHTYDTATFHLTI 430 Query: 287 CVGVAQY--DPARHPDLSALLGSADAAMYERKKASR 320 G+A + + +H LL +AD A+Y K+ R Sbjct: 431 SAGLAFHMDEDMKHETAEGLLRTADNALYTAKQNGR 466 >gi|134094840|ref|YP_001099915.1| hypothetical protein HEAR1631 [Herminiimonas arsenicoxydans] Length = 526 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 84/161 (52%), Gaps = 3/161 (1%) Query: 161 AVRMATIDELTGVSNRRGFTTLAQHAMAASKRSARAASLLYFDLNHFKQINDRFGHLEGD 220 A A D LTG++NR F + +A +R+ + S+LY DL+ FK +ND +GH GD Sbjct: 356 AQHQANHDVLTGLANRGLFDEIVNQQLALCERNQTSLSVLYIDLDGFKAVNDAYGHETGD 415 Query: 221 RALTDFARLLMDNLRESDVIGRLGGDEFVVFLTNTALADSTVVLAHLQAAVQDFNRNGQR 280 + L + A L + R SD++ RLGGDEF + + T L D+ L ++ G Sbjct: 416 QLLCEVAARLKASSRHSDLVARLGGDEFAIVMVGTGLKDAAFFAEKLVESLSAVYVFGNL 475 Query: 281 PYQLDYCVGVAQY-DPARHPDLSALLGSADAAMYERKKASR 320 + +GVA Y D A D ALL AD AMY+ K A R Sbjct: 476 SAHISASIGVASYPDCALTSD--ALLQYADRAMYQAKGAGR 514 >gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [Herminiimonas arsenicoxydans] Length = 524 Score = 94.0 bits (232), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 98/183 (53%), Gaps = 10/183 (5%) Query: 145 QALLKDLAAMVEQELVAVRMATIDELTGVSNRRGFTTLAQHAMAASKRSARAASLLYFDL 204 +A + +L +EQ VR D+LTG NRRG + + +A ++R + DL Sbjct: 345 EARIHNLETKLEQMSELVRE---DQLTGSLNRRGLEDIFERELARAERRGTPLCIAMLDL 401 Query: 205 NHFKQINDRFGHLEGDRALTDFARLLMDNLRESDVIGRLGGDEFVVFLTNTALADSTVVL 264 + FK+IND++GH GD AL R++ + LR DVI R GG+EF++ L +T + ++ + Sbjct: 402 DDFKKINDKYGHSAGDEALIHLVRVIKETLRSMDVIARFGGEEFLIVLPDTGMDEAVQTV 461 Query: 265 AHLQAAV--QDFNRNGQRPYQLDYCVGVAQYDPARHPDLSALLGSADAAMYERKKA--SR 320 LQ + Q F N R + + GVA + D A++ AD A+YE K+ +R Sbjct: 462 TRLQRELTKQIFMHNHTR-LLMTFSAGVALRN--EREDQRAMIERADKALYEAKRTGKNR 518 Query: 321 VLA 323 V+A Sbjct: 519 VVA 521 >gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 492 Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 5/160 (3%) Query: 163 RMATIDELTGVSNRRGFTTLAQHAMAASKRSARAASLLYFDLNHFKQINDRFGHLEGDRA 222 ++A D LTG+ NR+ F + Q A+ S+R S + FD++ FK +ND GHL GDR Sbjct: 321 QIAGTDTLTGLLNRQAFEIVFQQAILDSERRRIPLSAILFDIDFFKMVNDNHGHLAGDRI 380 Query: 223 LTDFARLLMDNLRESDVIGRLGGDEFVVFLTNTALADSTVVLAHLQAAV--QDFNRNGQR 280 L A + + +RESD++ R GG+EF+V L + L +T + +++ + DF Sbjct: 381 LQSIAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSMIAGHDFELPAS- 439 Query: 281 PYQLDYCVGVAQYDPARHPDLSALLGSADAAMYERKKASR 320 L +GVA+Y A + G AD A+Y+ K R Sbjct: 440 ALHLTVSLGVAEY--AYRETWLSFFGRADTALYQAKSEGR 477 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 552,388 Number of extensions: 21503 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 30 Length of query: 323 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 241 Effective length of database: 730,157 Effective search space: 175967837 Effective search space used: 175967837 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)