BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3589.p
         (309 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094277|ref|YP_001099352.1| DNA polymerase III subunit tau/...   124   7e-30

>gi|134094277|ref|YP_001099352.1| DNA polymerase III subunit
           tau/gamma [Herminiimonas arsenicoxydans]
          Length = 682

 Score =  124 bits (310), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 116/203 (57%), Gaps = 15/203 (7%)

Query: 109 DMPEPPPFDAIPPWEEETGSAAMPPSVPMAEATEKKAEPVI--------APAAAVEPPAP 160
           DMP  PP+D   P+     + A   S P  + TE ++ P +           A      P
Sbjct: 481 DMPPAPPWDDEVPFGGSDANDAFSSS-PAQKKTEVQSGPAVRPQAPAPAQSPAPTPASVP 539

Query: 161 QRPSATPAQQQETARIAAELGWDGHWPTLAASLSALRGVAHQMAFQSELVRCE-ALNGGN 219
           Q  S+ P +          L WDG+WP LAASL  +RGVA Q+A QSEL++C    +   
Sbjct: 540 QAVSSRPFELHPVP----SLNWDGNWPLLAASLP-VRGVAQQLAQQSELLKCAPGADSSQ 594

Query: 220 VCFHLRIPLETLRSSGSVDKLVAVLSERFGKEIRVETEIGAVSDTANAVAEAERAERQRK 279
           + F L + ++TL ++GSV+KL A L E FG+ +RV T +GAV  TANA A A+RAERQ +
Sbjct: 595 IQFDLLVAVDTLLAAGSVEKLTAALCEHFGQTVRVHTRVGAVEHTANAAAIADRAERQSE 654

Query: 280 AEQKMKSDPFVVSMMREFGATIV 302
           AEQ M+ DPFV  +MR+FGA IV
Sbjct: 655 AEQSMREDPFVQKLMRDFGAEIV 677


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.311    0.123    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 310,975
Number of extensions: 8155
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 228
Effective length of database: 733,452
Effective search space: 167227056
Effective search space used: 167227056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)