BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3586.p
         (198 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094279|ref|YP_001099354.1| recombination protein RecR [Her...   329   6e-92

>gi|134094279|ref|YP_001099354.1| recombination protein RecR
           [Herminiimonas arsenicoxydans]
          Length = 185

 Score =  329 bits (844), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 151/185 (81%), Positives = 173/185 (93%)

Query: 14  LRRLPGIGPKTAQRMAYHLLQHDRDAAADLSRSLAKALDTIRHCALCNTFTEQVICDTCQ 73
           +RRLPG+GPK+AQRMAYHL+QHDRD AA L R+L++A++ ++HCA+CNTFTE  +C+TC 
Sbjct: 1   MRRLPGVGPKSAQRMAYHLMQHDRDGAAMLGRALSQAVERVQHCAMCNTFTESAVCETCL 60

Query: 74  DSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLITRATD 133
           D++R+   LCVVE+P DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+DIHLEKLI+RATD
Sbjct: 61  DAERNAALLCVVETPGDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPKDIHLEKLISRATD 120

Query: 134 GVVTEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAML 193
           G+V EVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAML
Sbjct: 121 GIVQEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAML 180

Query: 194 DRRTT 198
           DRRTT
Sbjct: 181 DRRTT 185


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 304,384
Number of extensions: 10672
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 121
Effective length of database: 746,632
Effective search space: 90342472
Effective search space used: 90342472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)