BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3585.p (415 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094280|ref|YP_001099355.1| putative Formyl-CoA transferase... 721 0.0 gi|134095888|ref|YP_001100963.1| hypothetical protein HEAR2722 [... 207 6e-55 gi|134093632|ref|YP_001098707.1| formyl-coenzyme A transferase [... 182 4e-47 gi|134093633|ref|YP_001098708.1| formyl-coenzyme A transferase [... 169 3e-43 >gi|134094280|ref|YP_001099355.1| putative Formyl-CoA transferase [Herminiimonas arsenicoxydans] Length = 414 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/413 (83%), Positives = 379/413 (91%) Query: 3 TATSKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKIEAPGDGDPLRHWRVLKDGTS 62 T TS GPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKIE+P GDP+R WRVLKDGTS Sbjct: 2 TKTSSSGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKIESPDGGDPIRQWRVLKDGTS 61 Query: 63 LWWSVQARNKKSITLNMKDERAQEIARQLALDADVIIENYRPGVLEKWKLGYEDLRHLNP 122 LWWSVQARNKKS+TLN+KD R Q+IA++LAL+AD+IIENYRPGVLEKW LGYE L+ NP Sbjct: 62 LWWSVQARNKKSLTLNLKDPRGQQIAKKLALEADIIIENYRPGVLEKWSLGYEQLKAENP 121 Query: 123 ATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGV 182 ATIMVRLSG+GQTGPL+D PGFGAIGESMGG+RYVSG PDRPP+RIGISIGDS+AALHGV Sbjct: 122 ATIMVRLSGFGQTGPLKDQPGFGAIGESMGGMRYVSGFPDRPPLRIGISIGDSVAALHGV 181 Query: 183 IGAMMALRHRDVTGGRWNGKSGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRE 242 IGAMMALRHRD TGGRWNGKSGA+CVAGQGQM+DVALYEAVFNMMES+VPE+D+AGVVRE Sbjct: 182 IGAMMALRHRDATGGRWNGKSGAECVAGQGQMIDVALYEAVFNMMESLVPEYDYAGVVRE 241 Query: 243 RTGGALPGIVPSNTYTTGDGMNIVIAGNGDAIFKRLMSAIGRHDMANDPGLARNDGRVPR 302 RTGGALPGIVPSNTYTTGDG NIVIAGNGDAIFKRLM A+GR D+AND LARNDGRVPR Sbjct: 242 RTGGALPGIVPSNTYTTGDGENIVIAGNGDAIFKRLMLAMGRDDLANDAQLARNDGRVPR 301 Query: 303 TQEIDDAIQQWCSTQTIESALARLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADG 362 T EID AIQ WC+TQTI+SA+A LQAADVP GKIYSV+DMMND QFLAR MFEQH FADG Sbjct: 302 TAEIDGAIQAWCATQTIDSAMAILQAADVPAGKIYSVRDMMNDPQFLARKMFEQHTFADG 361 Query: 363 TPVKLPAITPKLSETPGQTKWLGPELGAHSDEILQSLGYDEAHIKKLRDQGVV 415 TP+KLPAITPKLSETPG+TKWLGP LG H+D++L++LGYD+A I +LR GVV Sbjct: 362 TPIKLPAITPKLSETPGETKWLGPALGEHTDDVLKTLGYDDAGIAELRRDGVV 414 >gi|134095888|ref|YP_001100963.1| hypothetical protein HEAR2722 [Herminiimonas arsenicoxydans] Length = 400 Score = 207 bits (528), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 136/411 (33%), Positives = 210/411 (51%), Gaps = 20/411 (4%) Query: 9 GPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKIEAPGDGDPLRHWR-VLKDGTSLWWSV 67 GPL G++V+EL +++GP C MLA+ GADVIK+E DGD R + +L G S + + Sbjct: 3 GPLNGMRVIELAHIMSGPICGMMLADMGADVIKVEKTPDGDDSRRFSPMLPCGESASFMI 62 Query: 68 QARNKKSITLNMKDERAQEIARQLALDAD--VIIENYRPGVLEKWKLGYEDLRHLNPATI 125 RNK+ I LN+K E +E+ R+L DAD V+IENYR G +EK+ LGYE+L+ LNP I Sbjct: 63 VNRNKRGIGLNLKTEGGREVLRRLLADADADVVIENYRAGTMEKFGLGYEELKLLNPGLI 122 Query: 126 MVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGA 185 +SG+G+TGP D GF I + M G+ ++G R P++ G + D A + +G Sbjct: 123 YCSISGFGRTGPYADKGGFDLIAQGMSGMMSMTGEEGRAPIKAGSPVADINAGILAALGI 182 Query: 186 MMALRHRDVTGGRWNGKSGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTG 245 A ++ T G GQ+VD +L+EA M + G + + G Sbjct: 183 AAAYANKLRT--------------GLGQVVDTSLFEAGLQQMYWPAANYFADGTILPKMG 228 Query: 246 GALPGIVPSNTYTTGDG-MNIVIAGNGDAIFKRLMSAIGRHDMANDPGLARNDGRVPRTQ 304 A P + + DG +NI A + ++RL+ + +A+DP N R+ + Sbjct: 229 SANSTSAPYQVFASSDGWINIGAANQNN--YERLLEVLQMPALADDPRFRTNADRMANRE 286 Query: 305 EIDDAIQQWCSTQTIESALARLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTP 364 + + + T+T L A +P G + +V + M Q +ARDM + + P Sbjct: 287 ALVQLLNERLVTRTTAQWLEEFDAVGLPAGPVLNVAEAMAHEQAIARDMIVETEHPVAGP 346 Query: 365 VKLPAITPKLSETPGQTKWLGPELGAHSDEILQSLGYDEAHIKKLRDQGVV 415 VK + + S+ G ++ P LG H+ ++L LGY E I L+ Q V Sbjct: 347 VKGLGLPIRFSDDAGTSQRPAPLLGEHTFKVLLELGYGEEEILVLQQQQAV 397 >gi|134093632|ref|YP_001098707.1| formyl-coenzyme A transferase [Herminiimonas arsenicoxydans] Length = 419 Score = 182 bits (461), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 127/440 (28%), Positives = 210/440 (47%), Gaps = 52/440 (11%) Query: 6 SKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKIEAPGDGDPLRH-WRVLKDGTSLW 64 S+ PLAGIK+++ + AGP C+++LA FGADVIK+E PG GD R+ R + D +L+ Sbjct: 2 SQTLPLAGIKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRNQLRDIPDADALY 61 Query: 65 WSVQARNKKSITLNMKDERAQEIARQLALDADVIIENYRPGVLEKWKLGYEDLRHLNPAT 124 +++ NK+S+TL+ K +E+ ++ ++DV++EN+ PG L++ + ++ LNP Sbjct: 62 FTMLNSNKRSLTLDTKTPAGKEVLERMIKESDVMVENFGPGALDRMGFSWARIQELNPGM 121 Query: 125 IMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIG 184 IM + G+ + DL + + + GG +G D PP ++GD+ +H IG Sbjct: 122 IMASVKGFSEGHHYEDLKVYENVAQCAGGAASTTGFWDGPPTVSAAALGDTNTGMHLAIG 181 Query: 185 AMMALRHRDVTGGRWNGKSGADCVAGQGQMVDVALYEAVFNMMESMVPE---FDFAGVVR 241 + AL R T G+GQ V VA+ +AV N+ + + D GV++ Sbjct: 182 ILTALMGRQKT--------------GKGQKVAVAMQDAVLNLCRVKLRDQQRLDKLGVLK 227 Query: 242 E---RTGGALPGIVPSNTYTTG---------------DGMNIVIAGNGDAIFKRLMSAIG 283 E G +VP G D + D + + AIG Sbjct: 228 EYPQYPHGTFTDVVPRGGNAGGGGQPGWVLKCKGWETDPNAYIYFTVQDHAWPPIAHAIG 287 Query: 284 RHDMANDPGLARNDGRVPRTQEIDDAIQQWCSTQTIESALARLQAADVPVGKIYSVKDMM 343 + + ANDP D R + +I I+ W +T A+ L+ D+P + S+K++ Sbjct: 288 KDEWANDPAYNTPDARQDKIFDIFATIEDWLKDKTKFEAVDILRKFDIPCAPVMSMKEIA 347 Query: 344 NDAQFLAR-DMFE-QHQ------FADGTPVKLPAITPKLSETPGQTKWLGPELGAHSDEI 395 ND A + E +H+ G+P+K + P+++ + P LG H+DE+ Sbjct: 348 NDPSLRASGSIVEVEHKGRGEKYLTVGSPIKFSDLKPEITAS--------PLLGEHTDEV 399 Query: 396 LQSLGYDEAHIKKLRDQGVV 415 L SLGY + I L V Sbjct: 400 LASLGYSKEEIAALHTSKAV 419 >gi|134093633|ref|YP_001098708.1| formyl-coenzyme A transferase [Herminiimonas arsenicoxydans] Length = 416 Score = 169 bits (427), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 125/432 (28%), Positives = 206/432 (47%), Gaps = 48/432 (11%) Query: 11 LAGIKVLELGTLIAGPFCSRMLAEFGADVIKIEAPGDGDPLR-HWRVLKDGTSLWWSVQA 69 L+G ++L+ + +GP C+++LA FGADVIK+E G+GD R R + D SL++++ Sbjct: 5 LSGYRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPDADSLYFTMLN 64 Query: 70 RNKKSITLNMKDERAQEIARQLALDADVIIENYRPGVLEKWKLGYEDLRHLNPATIMVRL 129 NK+SITL+ K+ + +++ L + DV++EN+ PG L++ +E + LNP ++ + Sbjct: 65 HNKRSITLDTKNPKGKQVLETLIKECDVLVENFAPGALDRMGFTWERIHELNPKMVVASV 124 Query: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMAL 189 G+G GP + + + GG +G D PP+ G IGDS LH +G + AL Sbjct: 125 KGFG-PGPYEHCKVYENVAQCAGGSASTTGFDDGPPMVTGAQIGDSGTGLHLALGILAAL 183 Query: 190 RHRDVTGGRWNGKSGADCVAGQGQMVDVALYEAVFNMMESMVPE---FDFAGVVRER--- 243 R + G+GQ V + +AV N+ + + + GV++E Sbjct: 184 LQRQTS--------------GRGQKVLAPMQDAVLNLCRVKLRDQQRLERTGVMKEYPQY 229 Query: 244 ---------------TGGALPG-IVPSNTYTTGDGMNIVIAGNGDAIFKRLMSAIGRHDM 287 +GG PG I+ + T I G A++ + IG+ + Sbjct: 230 PDTPFGDSVPRAGNASGGGQPGSILKCKGWETDPNAYIYFVNQG-AVWDSVCKVIGKEEW 288 Query: 288 ANDPGLARNDGRVPRTQEIDDAIQQWCSTQTIESALARLQAADVPVGKIYSVKDMMNDAQ 347 DP A RV + I A+++W T+T A+ L D+P G I S+K++ + Sbjct: 289 LADPSFATPALRVNHMKAIFAAVEEWTKTKTKFEAMDILNKFDIPCGPILSMKEIAEEPS 348 Query: 348 FLARDMFEQHQFADGTPVKLPAITP----KLSETPGQTKWLGPELGAHSDEILQSLGYDE 403 + PV+ +T KLS++P P LG H++E+L LGY E Sbjct: 349 LRETGTIVEVDH----PVRGKYLTVGNPIKLSDSPTDVT-RSPLLGEHTEEVLGQLGYSE 403 Query: 404 AHIKKLRDQGVV 415 I LR +GV+ Sbjct: 404 EQIADLRKEGVI 415 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 903,967 Number of extensions: 41980 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 4 Length of query: 415 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 331 Effective length of database: 723,567 Effective search space: 239500677 Effective search space used: 239500677 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)