BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3583.p (269 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 174 4e-45 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 155 3e-39 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 154 3e-39 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 139 1e-34 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 133 1e-32 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 174 bits (441), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 152/250 (60%), Gaps = 14/250 (5%) Query: 5 LQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPS 64 ++ + +F + D + + N + A+A GE V+++G +G GKSTLL + AGL+ Sbjct: 7 IELKGVAKSFKTAD--GTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAAD 64 Query: 65 SGSVKVFGE----PLNGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQ 120 G+ K G+ P++GI +FQ+ AL PW + QNV GL+ +G E+ Sbjct: 65 QGTAKYRGQEIYSPVSGI----AMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRAD 120 Query: 121 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE 180 L +GL GFG P +LSGGM++RV +A+ L+ PD++LMDE FSALD+ T + + ++ Sbjct: 121 AMLDLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDD 180 Query: 181 VLELWNAKK---KAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEI 237 +LE+W K+ K +L ++H+++EA+ M+DR++VL++ PG E RI+LPRPR+V + Sbjct: 181 ILEMWEEKRIPTKGILIVSHNIEEAVMMADRILVLSSSPG-RIRSEIRINLPRPRNVDSV 239 Query: 238 RMHPRFVELH 247 + E++ Sbjct: 240 EIRALIDEVY 249 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 155 bits (391), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 130/217 (59%), Gaps = 5/217 (2%) Query: 3 PALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQ 62 P L +T + +K+ TA D + + ++GP+GCGKSTLL G + Sbjct: 7 PLLDVRGVTLQYKTKE---HLVTATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMM 63 Query: 63 PSSGSVKVFGEPLNGINRRAGYMFQA-EALMPWRSALQNVIAGLQYRGQDE-KSAEELGQ 120 P+ G +++ + + +FQ + L PW++ QNV+ L G+ + K AE+ Sbjct: 64 PTEGEMRLHDKVITKPWYDRMMVFQEFDQLPPWKTVKQNVMFPLLASGKLKGKEAEDKAM 123 Query: 121 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE 180 ++ +V L F D YPH LSGGM++RVA+A+ + ++PDI+LMDEP++ALD TR+ M++E Sbjct: 124 YYIEKVNLSKFADHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTRKKMQDE 183 Query: 181 VLELWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPG 217 +L+LW+ VLF+TH + EA+ + +R+++L+ PG Sbjct: 184 LLQLWDDTHFTVLFVTHSIAEAVKIGNRILLLSPHPG 220 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 154 bits (390), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 147/259 (56%), Gaps = 12/259 (4%) Query: 7 FDNITCTFV-------SKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAG 59 DNI F+ S + + A+ + +L +A GEF++++G +GCGKSTLLN+ AG Sbjct: 1 MDNINGKFIDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAG 60 Query: 60 LLQPSSGSVKVFGEPLNGINRRAGYMFQAEALMPWRSALQNVIAGLQ-YRGQDEKSAE-- 116 L Q + G + + G + +FQ +L+PW + +NV ++ G+ E A+ Sbjct: 61 LTQSTGGMLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLR 120 Query: 117 ELGQQWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQL 176 + L+ VGL + P+++SGGM++RV +A+ L ++P ++LMDEPF ALD TR Sbjct: 121 ARTRAALSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAH 180 Query: 177 MENEVLELWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGE-FRIDLPRPRDVA 235 +++E+L++ A V+ +THD+DEA+ +SD++++L GP IGE + L PR+ Sbjct: 181 LQDELLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSA-TIGEILEVKLAHPRERV 239 Query: 236 EIRMHPRFVELHQQIWDVL 254 + ++ E + + L Sbjct: 240 ALAKDAQYSEYRTAVLEFL 258 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 4/216 (1%) Query: 25 TAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSVKVFGEPLNGI---NRR 81 T V N L+I GEF +++GP+GCGK+TLL + AG +P +G + + G L G+ R Sbjct: 17 TVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPPEQRV 76 Query: 82 AGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQQWLARVGLQGFGDRYPHQLSG 141 +FQ AL P + N+ L+ + ++ + L V L GF RYPH+LSG Sbjct: 77 VRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRLTGFAARYPHELSG 136 Query: 142 GMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLELWNAKKKAVLFITHDLDE 201 G R+RV++A+ L+ P ++L+DEP SALD Q R+ M+ E++ L +++THD E Sbjct: 137 GQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFVYVTHDQAE 196 Query: 202 AIAMSDRVIVLAAGPGTHPIGEFRI-DLPRPRDVAE 236 A+A+S R+ V+ G RI PR R VA+ Sbjct: 197 ALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVAD 232 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 133 bits (334), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 119/199 (59%), Gaps = 7/199 (3%) Query: 24 YTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSVKVFGEPLNGIN---R 80 + A+ + L GE +++GP+GCGK+TLL + AGL QP G V + GE + + R Sbjct: 15 FVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRER 74 Query: 81 RAGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQQWLAR----VGLQGFGDRYP 136 + G++FQ AL + +N+ GL+ R + +E + ++ + + V L DRYP Sbjct: 75 QVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELVQLDWLADRYP 134 Query: 137 HQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLELWNAKKKAVLFIT 196 QLSGG R+R+ALA+ L ++P ++L+DEPF ALD + R+ + + L + +F+T Sbjct: 135 PQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVT 194 Query: 197 HDLDEAIAMSDRVIVLAAG 215 HD +EA+ ++D+++++ G Sbjct: 195 HDQEEALEVADQIVLMNKG 213 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 526,779 Number of extensions: 22060 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 47 Length of query: 269 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 189 Effective length of database: 736,747 Effective search space: 139245183 Effective search space used: 139245183 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)