BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3581.p
         (847 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096607|ref|YP_001101682.1| hypothetical protein HEAR3460 [...   658   0.0  

>gi|134096607|ref|YP_001101682.1| hypothetical protein HEAR3460
           [Herminiimonas arsenicoxydans]
          Length = 852

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/794 (44%), Positives = 497/794 (62%), Gaps = 16/794 (2%)

Query: 6   QSQHFLRHMPAIVDCERALRELSGAWRLIESTTKMVCPAEAKSILPTIKITREGFNQLEK 65
           Q   FL +M  +  CE++LREL+  WR+IE++ KM CP EAK+ILPT+  TR GFN+LE+
Sbjct: 8   QIDSFLPYMRDVSRCEQSLRELNLMWRMIEASAKMNCPLEAKAILPTMAATRAGFNRLEQ 67

Query: 66  RLIANLVEQNISKVVQEFDFKARVIIDIVVRNLFERTADVGFLAMDDAIRSFILEGPEAD 125
            L+++LV + +S V++E   KA+ +IDIVVRNL+ERTADVGFLA D  + +F+  G   D
Sbjct: 68  ELVSSLVREKVSNVLEEIGTKAQYVIDIVVRNLYERTADVGFLATDRELCAFV-AGLHDD 126

Query: 126 SREIVERLQAYRQKYTVYDEIFILDTEGRVLAHLDQDNAVECSYDPLVARTLAAAGYVET 185
              I  RL+AYR KYTVYDEI +LD  G VL  +D+   +E S DPL+ +TLA+  YVET
Sbjct: 127 RDMIRARLRAYRSKYTVYDEIILLDDAGNVLVQIDEATPLEGSTDPLLRQTLASDTYVET 186

Query: 186 FAVSDLRGGQ-RALIYSHKIVDPADGQPIGVLCLCFPVAVEMNDIFSGLRKPHDRSVMLM 244
           F  +DLR G+  ALIYS ++  P  G  IGVLCLCF    EM  IF   R   +RS ML+
Sbjct: 187 FRATDLRPGRHEALIYSRRMHHPQTGAVIGVLCLCFHFEEEMASIFRSHRDSAERSNMLL 246

Query: 245 LDGEGRVIASSDSQHVPVGCIVPLALEDSYQIVSHAGREYLARTCAARNYQGYSGP-GWF 303
           LDG  RVIAS+D + +PVG  VP+  + + ++V + GREYLART +A  YQGY GP GW 
Sbjct: 247 LDGGNRVIASADPRWIPVGAEVPVNRDAAPRLVVYGGREYLARTFSADGYQGYKGPPGWQ 306

Query: 304 GHVMVACDLAFRQPNQDMLAQYDPQLLAGVMSHAKSFCPPLHDVTTMADAINHSLRRVVW 363
           G VM+  +L F     + L   D  +  G++SHA++FCPPL ++ + A+ I    RRVVW
Sbjct: 307 GQVMIPVELGFTGRATNALTSLDQHVADGLLSHAQTFCPPLFEIMSAAETI----RRVVW 362

Query: 364 NGKIMASGEAGDLLRLKAILQEISQTGDETNEVFRKSILDLYATALSANLQDGQYISRLM 423
           NG++M +G+ G+LL+LK IL++IS+TG  +NE+F +SI DLY T LS++L D +++S LM
Sbjct: 363 NGQVMTAGQNGELLKLKTILEQISETGARSNELFSQSIRDLYETVLSSSLSDAEFVSHLM 422

Query: 424 VDIMDRNLYERANDCRWWSLTPRLRQIMAKEVRSAAELAEMTAILSAINALYTVYARLVV 483
           VD++DRNLYER++DCRWW+LTP L+  +A   +SA  +A ++ IL  IN+LYTVY R+  
Sbjct: 423 VDLLDRNLYERSDDCRWWALTPELQVALAAPFKSAETVARLSEILGYINSLYTVYTRIFA 482

Query: 484 FDAQGRIVATSSPLADGSELIGTYVEPQLLRDTLHLTDASQYCVSPFAPTPLYDGAATYL 543
           +D  G I+A+S   +DG E++GT ++         L +  QY V+PF  T LY    TY+
Sbjct: 483 YDDTGMIIASSDYTSDGLEVVGTMMDDATFEQVRALRNDQQYYVTPFEKTALYGHRPTYV 542

Query: 544 YCAALFHPERAQAM-GGIAVVFDATPEFANMLAGALPEHPGAFAAYTDRHGQVISSTHAD 602
           Y AA+ HP+ A  M GGI +V DA PEF+ ML GAL +     A + DR G++ISST A 
Sbjct: 543 YHAAIRHPDNAAHMVGGIGIVLDAEPEFSAMLKGALGDKKSTAALFVDRRGRIISSTDAT 602

Query: 603 YPPGSVLPLGSKASAGANGSSTADIRIHEGSYMVVGHTTSFGYREYKNDGQYVNDVIASV 662
            P G+ L +        NG S + I IH+G Y ++G T S GYRE+K    Y  DV+A V
Sbjct: 603 RPAGTSLDIDPALLDMKNGDSASRIVIHDGHYAILGCTMSHGYREFKTSDGYREDVLAVV 662

Query: 663 FVPIGQQSDAEPALESSS--VEATPCTGPKREFASIRLDGATFALPAAQVVESIEAER-- 718
               G++        S+S  +E        REFA+  +DGA FA+ A  V E++ A R  
Sbjct: 663 VRSFGEERRQISHGNSASAVLELDAMAPAGREFATFFIDGALFAMAAEYVQEALPASRIA 722

Query: 719 -MLSTSTFKPVLAGALDYQDGSGAASVFVPVVDMRQLLLGSSTAQHQGKEIIIVRHAGRT 777
            M   S  + +   AL +++ S     FV V D+  L+ G  +      ++I+V    ++
Sbjct: 723 PMSMGSRTERIGILALQHENES---KRFVWVFDLGYLMRGCRSVIDSSSQVIVVNRGTQS 779

Query: 778 VGLLVDSLHDVLEF 791
           +GLLV  LH V EF
Sbjct: 780 IGLLVSELHGVPEF 793


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,551,271
Number of extensions: 63593
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 847
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 757
Effective length of database: 703,797
Effective search space: 532774329
Effective search space used: 532774329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)