BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3580.p (523 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 367 e-103 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 367 e-102 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 339 2e-94 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 336 2e-93 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 327 9e-91 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 367 bits (942), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/539 (45%), Positives = 344/539 (63%), Gaps = 45/539 (8%) Query: 3 FRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRAAV 62 F+ + V ++L+ F ++ + I+ + + M +I+ + D+ N E+ LS ++ A Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAG---DIYNQELMGLSYIKDAN 58 Query: 63 FEQSLASR---GILMSTTSEE-------LKQY-----ADLLPQQISIYSEAEKTLAKMFA 107 + R +L+STT EE +K+Y +L Q S++ K L +A Sbjct: 59 IDLLFIGRARGNVLLSTTEEERTLNKENIKKYLASAKENLAKAQPLFVSDSAKALFAKYA 118 Query: 108 EAPDTTDTE-KKAIIL-----IQQQSAEVLPRLQQLIKAVRDNDSDAIKAVLAASPLSRL 161 + E +A+ L +QQ+SAE+ + Q L A+ L + Sbjct: 119 TVSQDYEKEMWRALALADKEPLQQRSAELTTSMAQ--------------TRLHANTLDNV 164 Query: 162 QAQRRATLAELARFEDKLNGEARDDAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVV 221 L EL++ ++ +A + + LY ++R +V L +L+ G++ +LI R++ Sbjct: 165 -------LTELSKQKEVRAAQAHVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLK 217 Query: 222 KQLGGEPADAAELASLIAKGDLRREVNVASADPASLMMSMKSMNTALRDIVREVRAGTDA 281 QLGGEP AA +A+ IA GDL +++ S D S++ +M+ M +L IV +VR+GTD Sbjct: 218 GQLGGEPNYAAGVAARIAAGDLTVAIDLRSKDQTSMLFAMREMRDSLASIVSQVRSGTDT 277 Query: 282 ITTASTEIAAGNLDLSSRTEEQASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAV 341 ITTAS +IAAGNLDLSSRTEEQAS+LE+TAS+ME++ +TVK NA+++ QA+ LA AS+ Sbjct: 278 ITTASGQIAAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASST 337 Query: 342 ASESGQLVQEVVSTMAAIDASSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGF 401 A G +V +VV TM +I SS+KIVDII VIDGI+FQTNILALNAAVEAARAGEQGRGF Sbjct: 338 AIRGGAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF 397 Query: 402 AVVASEVRSLAQRSSTAAREIKALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVI 461 AVVASEVRSLAQRS++AA+EIK LI DSV+KV GS LV QAG TM E+V ++RV ++ Sbjct: 398 AVVASEVRSLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIM 457 Query: 462 GAISAASSEQSKGIDEINHAIAQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 I+AA EQS GI+++N AIAQMD+VTQQNAALVE+AAAASQSLQ QA LS +V VF Sbjct: 458 SDITAAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVF 516 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/538 (45%), Positives = 337/538 (62%), Gaps = 47/538 (8%) Query: 1 MDFRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRA 60 M F+ LK+ RL + FG +L+L+ + M +L++ DV A V +M Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQ----------DVAKATV----LMEE 46 Query: 61 AVFEQSLASRGI--LMSTTSEELKQYADLLPQQISIYSEAEKTLAKMFAEAPDTTDTEKK 118 A ++ LA + I + + T + P+Q I + ++ ++ D +T Sbjct: 47 ATIKERLAQQWIKGIETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELET--- 103 Query: 119 AIILIQQQSAEVLPRLQQ---LIKAVRDND-----------SDAIKAVLAASPLSRLQAQ 164 +++ + ++L + + A+RD+ +AI + + + +Q+ Sbjct: 104 --LVVSAEGKKLLATVAEKRATYTAIRDDVMNLREARGAELQNAIANKMKPAADAYIQSV 161 Query: 165 RRATLAELARFEDKLNGEARDDAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQL 224 A++ FED A+ +Y++AR L++ LG++AL LG+V A ++ RS+ K Sbjct: 162 EAVVNAQINNFED-----AKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITK-- 214 Query: 225 GGEPAD-AAELASLIAKGDLRREVNVASAD-PASLMMSMKSMNTALRDIVREVRAGTDAI 282 P D A +A L+A GDL + V S D L+ ++K MN +L + +VR+G D I Sbjct: 215 ---PLDYAVSVARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTI 271 Query: 283 TTASTEIAAGNLDLSSRTEEQASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVA 342 TAS +IA+GNLDLSSRTEEQASSLE+TAS+ME+L +TVK NAD+A QANQLA AS VA Sbjct: 272 ATASNQIASGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVA 331 Query: 343 SESGQLVQEVVSTMAAIDASSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFA 402 + G +V +VV TM I+ S++KIVDII VIDGI+FQTNILALNAAVEAARAGEQGRGFA Sbjct: 332 EKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 391 Query: 403 VVASEVRSLAQRSSTAAREIKALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIG 462 VVASEVRSLAQRS+ AA+EIK LIDDSVDKV TGS LV +AG TM EVV SV+RV ++ Sbjct: 392 VVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMA 451 Query: 463 AISAASSEQSKGIDEINHAIAQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 I AAS EQS GI+++N AI QMDQVTQQNAALVE+AAAA++SL QA L+ V +F Sbjct: 452 EIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIF 509 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 339 bits (870), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 244/552 (44%), Positives = 329/552 (59%), Gaps = 71/552 (12%) Query: 1 MDFRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRA 60 M LK+ RL L F VLLL+ ++ + + ++ ++ Q + + AE ++LSI Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEA--AEQERLSIQWH 58 Query: 61 A----------------------VFEQSLASRGILMST---------TSEELKQYADLLP 89 A F+ + ++ + ++ SEE K+ + Sbjct: 59 AGNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVG 118 Query: 90 QQISIYSEAEKTLAKMFAEAPDTTDTEKKAIILIQQQSAEVLPRLQQLIKAVRDNDSDAI 149 + ++Y + K + K+ A+ + E K II ++++ P L+ K V+D Sbjct: 119 DKRTVYMDIRKEVFKLKADGSPAAEEEAKKII-----ASKMDPALETYSKTVQD------ 167 Query: 150 KAVLAASPLSRLQAQRRATLAELARFEDKLNGEARDDAKALYKTARRLIVTLGVLALLLG 209 + F+ EA+ + LY + R ++TLG +AL L Sbjct: 168 ----------------------VVDFQQVTFLEAKTEVDNLYASGRMFLLTLGAIALALS 205 Query: 210 MVSAILIIRSVVKQLGGEPADAAELASLIAKGDLRREVNVASAD-PASLMMSMKSMNTAL 268 + A L+ RS+ + L A E+A +A GDLR + V S+D L+ +++ MN L Sbjct: 206 ALLAWLLSRSITRPL----EYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGL 261 Query: 269 RDIVREVRAGTDAITTASTEIAAGNLDLSSRTEEQASSLEQTASAMEQLVATVKNNADSA 328 V EVR G + I TAS +IAAGNLDLSSRTEEQASSLE+TAS+ME+L +TVK NAD+A Sbjct: 262 VKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNA 321 Query: 329 GQANQLAEQASAVASESGQLVQEVVSTMAAIDASSKKIVDIISVIDGISFQTNILALNAA 388 QANQLA AS VA + G +V +VV TM I++S+KKIVDII VIDGI+FQTNILALNAA Sbjct: 322 RQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAA 381 Query: 389 VEAARAGEQGRGFAVVASEVRSLAQRSSTAAREIKALIDDSVDKVATGSALVNQAGQTMH 448 VEAARAGEQGRGFAVVASEVR+LAQRS+ AA+EIK LI DSVDKV GS LV +AG TM Sbjct: 382 VEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTME 441 Query: 449 EVVTSVERVVSVIGAISAASSEQSKGIDEINHAIAQMDQVTQQNAALVEQAAAASQSLQA 508 EVV SV+RV ++ I AAS EQS GI+++N AI QMDQVTQQNAALVE+AAAA++SL Sbjct: 442 EVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNE 501 Query: 509 QARKLSGVVEVF 520 QA KL+ V VF Sbjct: 502 QAGKLAEAVSVF 513 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 336 bits (862), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 220/431 (51%), Positives = 290/431 (67%), Gaps = 10/431 (2%) Query: 93 SIYSEAEKTLAKMFAEAPDTTDTEKKAIILIQQQSAEVLPRLQQ-LIKAVRDNDSDAIKA 151 + Y ++E+ K + P T E+K + + L +Q LI A+R ++ ++ Sbjct: 89 NFYLQSEEEWKK-YLSLPIETLEERKVADEVTAKRIRYLKEAEQGLIAALRAGRNEEVED 147 Query: 152 VLAASPLSRLQAQRRATLAELARFEDKLNGEARDDAKALYKTARRLIVTLGVLALLLGM- 210 +L Q+ ++T EL + K D++ L+ R +I +GVL L+G+ Sbjct: 148 ILVNKMPPLFQSLTKST-DELVELQMKSAATGYQDSQTLFHYFR-IIAVVGVLLGLIGVA 205 Query: 211 VSAILIIRSVVKQLGGEPADAAELASLIAKGDLRREVNVASADP-ASLMMSMKSMNTALR 269 + A +IR++ G + IA GDL + V S + +LM+ ++ M L Sbjct: 206 IYAFFLIRAIT----GPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLT 261 Query: 270 DIVREVRAGTDAITTASTEIAAGNLDLSSRTEEQASSLEQTASAMEQLVATVKNNADSAG 329 D V +VR G+ AI+TA+TEIAAGNLDLSSRTE+QA+SLE+TAS+ME+L +TVK N D+A Sbjct: 262 DTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNAR 321 Query: 330 QANQLAEQASAVASESGQLVQEVVSTMAAIDASSKKIVDIISVIDGISFQTNILALNAAV 389 QANQLA ASAVA + G +V +VV+TM AI+ S++KIVDII VIDGI+FQTNILALNAAV Sbjct: 322 QANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNILALNAAV 381 Query: 390 EAARAGEQGRGFAVVASEVRSLAQRSSTAAREIKALIDDSVDKVATGSALVNQAGQTMHE 449 EAARAGEQGRGFAVVASEVRSLAQRS+ AA+EIK LIDDSV+KV G+ LV +AG TM E Sbjct: 382 EAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTE 441 Query: 450 VVTSVERVVSVIGAISAASSEQSKGIDEINHAIAQMDQVTQQNAALVEQAAAASQSLQAQ 509 VV SV+RV ++ I AAS EQS GI+++N AI QMD+VTQQNAALVEQAAAA+ SL+ Q Sbjct: 442 VVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQ 501 Query: 510 ARKLSGVVEVF 520 A LS VV VF Sbjct: 502 ATNLSTVVSVF 512 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 327 bits (838), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 198/344 (57%), Positives = 251/344 (72%), Gaps = 8/344 (2%) Query: 181 GEARDDAKALYKTARRLIVT-LG---VLALLLGMVSAILIIRSVVKQLGGEPADAAELAS 236 G A + A+ Y T R +I T LG V A LLG L++RSV QLGGEP AA++ Sbjct: 172 GLAYEAAQQRYLTIRNVIATVLGAGAVAATLLGF----LLVRSVYAQLGGEPQYAAQIVR 227 Query: 237 LIAKGDLRREVNVASADPASLMMSMKSMNTALRDIVREVRAGTDAITTASTEIAAGNLDL 296 IA GDL + D SL+ +M+ M L V ++R +D I TAS +IAAGN+DL Sbjct: 228 RIAGGDLSATIITRKGDRNSLLAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDL 287 Query: 297 SSRTEEQASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASESGQLVQEVVSTM 356 S+RTE+QASSLE+TAS+ME+L ATVK NA A QANQLA AS +A + +V +VV+TM Sbjct: 288 SARTEQQASSLEETASSMEELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTM 347 Query: 357 AAIDASSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSS 416 +I AS+ +I DII VI+GI+FQTNILALNAAVEAAR GEQGRGFAVVA+EVRSLAQRS+ Sbjct: 348 DSISASAGRIGDIIGVINGIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSA 407 Query: 417 TAAREIKALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAISAASSEQSKGID 476 AA+EIK+LIDDS++KV G+ LV+QAG TM+E+V S+ +V ++G I+ AS EQ+ GI+ Sbjct: 408 EAAKEIKSLIDDSLEKVGAGATLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIE 467 Query: 477 EINHAIAQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 ++N AI QMD+VTQQNAALVE+AAAA+ SLQ QA L VV VF Sbjct: 468 QVNQAIGQMDRVTQQNAALVEEAAAAAGSLQEQACSLVQVVSVF 511 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.124 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 552,694 Number of extensions: 16043 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 14 Length of query: 523 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 437 Effective length of database: 716,977 Effective search space: 313318949 Effective search space used: 313318949 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)