BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3576.p (429 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094996|ref|YP_001100071.1| putative O-acetylhomoserine (Th... 647 0.0 gi|134094458|ref|YP_001099533.1| hypothetical protein HEAR1230 [... 238 4e-64 gi|134095118|ref|YP_001100193.1| cystathionine beta-lyase [Hermi... 124 6e-30 >gi|134094996|ref|YP_001100071.1| putative O-acetylhomoserine (Thiol)-lyase [Herminiimonas arsenicoxydans] Length = 427 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/416 (75%), Positives = 352/416 (84%), Gaps = 4/416 (0%) Query: 8 KFETVSVHGGYDPDPTTRAVAVPIYQTVAFAFDDTQHGADLFDLKVQGNIYSRIMNPTQD 67 KFET+++H GY DPTT+A AVPIYQTVA+ FD QHGADLFDLKV GNIY+RIMNPT Sbjct: 2 KFETIALHAGYASDPTTKAAAVPIYQTVAYTFDSAQHGADLFDLKVPGNIYTRIMNPTNA 61 Query: 68 VLEKRLAALEGGIAALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLFAHTLPQF 127 VLE+R+AALEGGI ALALASG AA+T AIQTI E GDNIVSA T+YGGTYNLFAHT+PQ Sbjct: 62 VLEQRVAALEGGIGALALASGMAAITAAIQTICEVGDNIVSAGTIYGGTYNLFAHTIPQQ 121 Query: 128 GIQTRFADPRQPASFEPLIDARTKAIYIESIGNPLGNVTDIAAVAEIAHRHGVPLIVDNT 187 GI+ RFA+ +P +F ID RTKAI+ ESIGNPLGNVTDIA +A+IAH HG+PLIVDNT Sbjct: 122 GIEVRFANSSEPDTFAAHIDERTKAIFCESIGNPLGNVTDIARLADIAHAHGIPLIVDNT 181 Query: 188 VATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAQHKERFKRLNEPDVS 247 V +PYL RP EHGADIVVH+LTKY+GGHG ++GG IVDSGKFPWA+HK RFKRLNEPDVS Sbjct: 182 VPSPYLCRPIEHGADIVVHALTKYMGGHGNSIGGIIVDSGKFPWAEHKARFKRLNEPDVS 241 Query: 248 YHGVVYTEALGEAAYIGRARVVPLRNTGAALSPFNAFQILQGIETLALRLDRITANTLAV 307 YHGVVYTEALG AAYIGRARVVPLRN GAAL+P NAF ILQGI+TLALR++RI ANT A+ Sbjct: 242 YHGVVYTEALGAAAYIGRARVVPLRNMGAALAPMNAFLILQGIDTLALRMERICANTQAL 301 Query: 308 AQYLKRHPKVRWVNYAGLEDHPDHALAQKYFKGRASGVLTFGVANG----RDGGARFQDA 363 A+YL+ H KV WV YAGL DHPDHALAQKY G+ASG+L+FGV + R GAR DA Sbjct: 302 AKYLQTHKKVAWVKYAGLPDHPDHALAQKYMDGKASGILSFGVKSNDTDPRAAGARTLDA 361 Query: 364 LQLFTRLVNIGDAKSLATHPASTTHRQLSPGELEKAGVTEDTVRLSIGIEHIDDLL 419 LQLF RLVNIGD KSLATHPASTTHRQL EL KAGV+ED +RLS+GIEHIDDL+ Sbjct: 362 LQLFMRLVNIGDTKSLATHPASTTHRQLDEVELAKAGVSEDMIRLSVGIEHIDDLI 417 >gi|134094458|ref|YP_001099533.1| hypothetical protein HEAR1230 [Herminiimonas arsenicoxydans] Length = 414 Score = 238 bits (608), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 143/428 (33%), Positives = 227/428 (53%), Gaps = 15/428 (3%) Query: 1 MADNPQWKFETVSVHGGYDPDPTTRAVAVPIYQTVAFAFDDTQHGADLFDLKVQGNIYSR 60 M D+ ++ F T ++H ++ PI+ +V F ++D + A +F K G Y R Sbjct: 1 MTDSKKYGFTTTTLHSDRQKAIEHGSLHKPIHTSVTFGYNDARELATVFQGKQPGYRYGR 60 Query: 61 IMNPTQDVLEKRLAALEGGIAALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLF 120 NPT LE ++ +E G A + A+G AA+ Q + + GD++VS++ L+G T +L+ Sbjct: 61 QGNPTVAALEDKVNKMEDGFATICFATGMAAIGAIAQALLQKGDHVVSSAFLFGNTNSLW 120 Query: 121 AHTLPQFGIQTRFADPRQPASFEPLIDARTKAIYIESIGNPLGNVTDIAAVAEIAHRHGV 180 T+ G+ D E I T+ +++E+I NP V D+A + ++ G+ Sbjct: 121 -QTVGLQGVAVSMVDATDVKHVEAAITPATRIVFVETIANPRTQVADLARIGKLCAERGI 179 Query: 181 PLIVDNTVATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAQHKERFKR 240 IVDNT+ +PYL +P GA IV+++LTK +GGHG LGG++ D+G + W+ RF Sbjct: 180 VYIVDNTMTSPYLFQPKSVGASIVINALTKSIGGHGNALGGSLTDTGLYDWS----RFPN 235 Query: 241 LNEPDVSYHGVVYTEALGEAAYIGRARVVPLRNTGAALSPFNAFQILQGIETLALRLDRI 300 + + Y V + I + R LR+ GA+L P A + G ET+ALRLDR Sbjct: 236 IFDTYKRYPTVQWG--------IAQIRAKSLRDFGASLGPEAAHHLAVGSETMALRLDRE 287 Query: 301 TANTLAVAQYLKRHPKVRWVNYAGLEDHPDHALAQKYFKGRASGVLTFGVANGRDGGARF 360 AN LAVAQ L+ +V V Y GL+ HP HA++ + F+ S + +F + G D + Sbjct: 288 CANALAVAQMLEADERVAAVYYPGLKSHPQHAISTELFRSYGS-LFSFELKEGID-CFDY 345 Query: 361 QDALQLFTRLVNIGDAKSLATHPASTTHRQLSPGELEKAGVTEDTVRLSIGIEHIDDLLA 420 + L+L N+GD ++L A T ++ G+ E +R+SIGIE DDL+ Sbjct: 346 LNRLKLGISASNLGDTRTLVIPVAHTIFYEMGAERRASMGIAESLIRVSIGIEDTDDLVE 405 Query: 421 DLEQALQS 428 D +AL + Sbjct: 406 DFRKALDA 413 >gi|134095118|ref|YP_001100193.1| cystathionine beta-lyase [Herminiimonas arsenicoxydans] Length = 388 Score = 124 bits (312), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 106/370 (28%), Positives = 164/370 (44%), Gaps = 49/370 (13%) Query: 64 PTQDVLEKRLAALEGGIAALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLFAHT 123 PT LE RLAA+E G L SG +A+ ++GD+++ +Y L Sbjct: 62 PTTFTLEARLAAIENGKHCLLAPSGLSAIAMVDFAFLKSGDDVLIPDNVYNPNRELANWL 121 Query: 124 LPQFGIQTRFADPRQPASFEPLIDARTKAIYIESIGNPLGNVTDIAAVAEIAHRHGVPLI 183 FGI R+ DP + LI T+ I+ E+ G+ V DI A+ + AH V + Sbjct: 122 AHDFGIAARYYDPLIGSGIADLIQPNTRLIWTEAPGSVSMEVPDIPAICKAAHAKSVLVA 181 Query: 184 VDNTVATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAQHKERFKRLNE 243 +DNT + LR F+ G DIV+ +LTKY G L GA+ Sbjct: 182 LDNTWSAGIALRAFDLGVDIVMQALTKYQSGGSDVLMGAV-------------------- 221 Query: 244 PDVSYHGVVYTEALGEAAYIGRARVVPLRNTGAALSPFNAFQILQGIETLALRLDRITAN 303 + +AL + R+ G +S +++ +L+ + T+ LR + A Sbjct: 222 -------ITQDQALNHRLELAHMRL------GFGVSADDSYLVLRSLPTMKLRFEAHDAA 268 Query: 304 TLAVAQYLKRHPKVRWVNYAGLEDHPDHALAQKYFKGRASGVLT--FGVANGRDGGARFQ 361 +A +L+ P++ V + L + P H + Q+ F G A G+ + F RF Sbjct: 269 ARKIAAWLQTQPQIATVLHPALPECPGHEIWQRDFSG-AGGLFSILFDARYTEAQTDRFV 327 Query: 362 DALQLFTRLVNIGDAKSLATHPASTTH-RQLSP--GELEKAGVTEDTVRLSIGIEHIDDL 418 D+L+LF + G A SL P H R+ P G+L +RL+IG+E DDL Sbjct: 328 DSLKLFKIGFSWGGANSLCV-PYRMQHMRRNWPHQGQL---------LRLNIGLEDPDDL 377 Query: 419 LADLEQALQS 428 + DL QA + Sbjct: 378 IGDLRQAFDA 387 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 823,922 Number of extensions: 34734 Number of successful extensions: 82 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 4 Length of query: 429 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 345 Effective length of database: 723,567 Effective search space: 249630615 Effective search space used: 249630615 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)