BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3571.p
         (354 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095549|ref|YP_001100624.1| bifunctional diaminohydroxyphos...   486   e-139
gi|134094605|ref|YP_001099680.1| tRNA-specific adenosine deamina...    58   8e-10

>gi|134095549|ref|YP_001100624.1| bifunctional
           diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (N-terminal)/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Herminiimonas arsenicoxydans]
          Length = 363

 Score =  486 bits (1252), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/351 (70%), Positives = 287/351 (81%)

Query: 3   LALIQAGFGILDTTPNPRVGCVIVKDRRVIGAGFTQPPGGNHAEIQAMADAAARGNEVRG 62
           LAL  A  G+  T PNPRVGCVIVK+ +VIG+G+TQP G  HAE+QA+ DAA +G +V G
Sbjct: 12  LALELAARGMFTTAPNPRVGCVIVKENQVIGSGYTQPAGHAHAEVQALNDAANKGYDVAG 71

Query: 63  ATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPLVAGQGLARLEAAGIDVACG 122
           +TVYVTLEPCSH GRTPPCADALIRA VARVVAAIADPNPLVAGQGLARLEAAGI+VACG
Sbjct: 72  STVYVTLEPCSHHGRTPPCADALIRARVARVVAAIADPNPLVAGQGLARLEAAGIEVACG 131

Query: 123 MLEEEARDINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITSQAARDDGHIWRA 182
           +LE EAR+INIGFL RM+ G+PWVRMKSAASLDG TALHNG+SQWIT   AR DGH+WRA
Sbjct: 132 VLEAEAREINIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARADGHVWRA 191

Query: 183 RACAIMAGIGTIQKDDAQLNVRAIETPRQPRRIVVDSKLAVSPEARVIQGGNTWVFTATD 242
           RACAI+ GIGT+++DD QL VRAI+ PRQP+RIV+DS+L +SP ARV+ GG TW+  A  
Sbjct: 192 RACAILTGIGTVREDDPQLTVRAIDIPRQPQRIVIDSQLQISPHARVLSGGGTWIVAAQA 251

Query: 243 APEKRAALEAEGAEVILLANAQGKVDLPGLLRELGQRQINELHVEAGAKLNGALLREGCV 302
            P +   L   G E+I+L NA GKVDLP L+ ELG+RQINELHVEAG KLNG+L+RE CV
Sbjct: 252 HPAREKILRDLGNEIIVLPNADGKVDLPALMLELGRRQINELHVEAGFKLNGSLIREDCV 311

Query: 303 DELLVYLAPALIGDGRNMFELPPLEDLSGKIGIRFHEVKQVGPDLRILARF 353
           DELLVYLAP L+GD + MF LP LE L  K  + FHEVKQ+G DLRILARF
Sbjct: 312 DELLVYLAPTLLGDAQRMFNLPVLESLEQKKNMTFHEVKQIGADLRILARF 362


>gi|134094605|ref|YP_001099680.1| tRNA-specific adenosine deaminase
           [Herminiimonas arsenicoxydans]
          Length = 170

 Score = 57.8 bits (138), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 16/144 (11%)

Query: 21  VGCVIVKDRRVIGAGFTQPPGGN----HAEIQAMADAAARGNEVR--GATVYVTLEPCSH 74
           VG V+VKD +VI  GF QP G +    HAEI A+  AA      R  G  +YVTLEPC  
Sbjct: 33  VGAVVVKDGQVIATGFNQPIGTHDPTAHAEIMALRAAATILGNYRLPGCELYVTLEPCVM 92

Query: 75  FGRTPPCADALIRAGVARVVAAIADPNPLVAGQGLARLEAAGID----VACGMLEEEARD 130
                 C+ A++ A +ARVV   +DP     G  +   E   ++    +  G++ +E   
Sbjct: 93  ------CSGAMMHARLARVVFGASDPKTGACGSIVNLFEQNQLNHHTQLTGGLMAQECGA 146

Query: 131 INIGFLHRMRTGRPWVRMKSAASL 154
           +   F    R      ++  ++S+
Sbjct: 147 LLKDFFAERRKAAQAAKLDDSSSI 170


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 698,859
Number of extensions: 28888
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 271
Effective length of database: 726,862
Effective search space: 196979602
Effective search space used: 196979602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)