BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3567.p
         (303 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095554|ref|YP_001100629.1| putative Tfp pilus assembly pro...   158   4e-40

>gi|134095554|ref|YP_001100629.1| putative Tfp pilus assembly
           protein PilW [Herminiimonas arsenicoxydans]
          Length = 315

 Score =  158 bits (399), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 163/319 (51%), Gaps = 47/319 (14%)

Query: 19  LTLVELMIALAVGLLVVLVAGSLLQQARSAYQDIDDAGRVQETGRLALDHLQQALRQAAH 78
           +TL+ELMIA+ +GL +VL A  LL  +++ Y   D    +QETGR A++ L +A+RQA +
Sbjct: 1   MTLIELMIAITLGLFLVLTAIGLLVASKTGYVMQDQQAHIQETGRYAIEILSRAVRQAGY 60

Query: 79  LPWE--TLDGKTAPTLTAGLRGLDDSGQAELLDPAT-GLFGNSTGDGVNHSDVLMLGLFG 135
             W   T+  +     +A + G D    A  L   T  L   ++ D VN SDVL L  FG
Sbjct: 61  ENWHSATMPAQVEAAFSASITGRD----AMTLKKTTPELDSLTSTDVVNGSDVLALRFFG 116

Query: 136 -TPRGSLAQVGNCSGAEVAAGPL---EESARSWVIYYIAPGTGDEAELRCRYQGKNGVWT 191
               G    + NC+G  VAA       E  R W I+++A  +  E ELRC+YQ K   W 
Sbjct: 117 DDADGEEGAILNCAGLPVAATSAATGNEQERGWSIFFVAKDSAGEPELRCKYQSKTS-WN 175

Query: 192 SDAIARGVEAMQLRYAIDSDGDGAPDRWLDATAMPA----------------------AA 229
           +DAIARGVE+ Q+ Y +D+DGDG  +++L+A  + A                        
Sbjct: 176 ADAIARGVESFQVLYGLDADGDGVAEQFLNADGLNALDARLLLSGENALARAGDFNRQTH 235

Query: 230 WRQVVLVRIALLVRGSQRRPGANEIAPR-SYDLFLPGR-----RSDAAWRVTET----EG 279
           W+++ ++++ LLVRGSQ    A + A R  YDLF          SD   R++E+      
Sbjct: 236 WKKITVIKLGLLVRGSQV---ARDDALRGEYDLFGAAYGDMHAASDKGSRISESALPAAA 292

Query: 280 EQRRRAVFQGTVMLRNLVA 298
           + R R VF  T+ LRN  A
Sbjct: 293 KNRIRKVFTHTIQLRNAAA 311


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 603,164
Number of extensions: 25737
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 222
Effective length of database: 733,452
Effective search space: 162826344
Effective search space used: 162826344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)