BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3566.p
         (171 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095555|ref|YP_001100630.1| putative type-4 fimbrial biogen...    67   7e-13

>gi|134095555|ref|YP_001100630.1| putative type-4 fimbrial
           biogenesis PILV-related transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 184

 Score = 66.6 bits (161), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 10  MIEVLVAILVIGTGALAMVMLQLHALRSSQDSGLHARATLMAQELAEL---RSAMPHPVG 66
           MIEVL+++ V+  G +    +QL ALR++Q S L  RA  +A ++A++     A      
Sbjct: 1   MIEVLISVFVLTAGVIGAAGMQLTALRTAQQSALQTRALYLASDMADMMRANGAQMQRDD 60

Query: 67  TSDPFL-----FSLSPGKALPAQVDCELAACSPSDFTRAALADWTGRLVRDFPHARVTVC 121
           +++P+L      S +P +          A C      R  +A    +L  DFP  RV +C
Sbjct: 61  SANPYLQVDHQVSTTPHRLADYSCYGAGAHCDAEQLARFDIAHLLQQLAADFPGGRVRIC 120

Query: 122 RD--------GRSRTPEDWQC----DDQGSAPVVLKLGWR---RIGAATPSTVASAPLLT 166
           RD        GR      W+C        SAPVV+K+GW+   R G A     A+AP + 
Sbjct: 121 RDALPWNAVAGRFA----WECTATASSAASAPVVIKIGWQEKDRTGNALEDAAAAAPGMV 176

Query: 167 LVL 169
           L +
Sbjct: 177 LTV 179


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 330,152
Number of extensions: 12595
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 96
Effective length of database: 753,222
Effective search space: 72309312
Effective search space used: 72309312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 125 (52.8 bits)