BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3560.p (248 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-tr... 214 2e-57 gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis... 57 7e-10 >gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-trans isomerase (NifM related) [Herminiimonas arsenicoxydans] Length = 248 Score = 214 bits (546), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 124/248 (50%), Positives = 151/248 (60%) Query: 1 MPVIVNEYELSDAEMAQELAARAEEEADLHAAMTTLVLRRLLLEQAQQLGLEQDDEDARI 60 M V VN E+ DA + QEL L ++ LVLR +LL +A +LG+ +D RI Sbjct: 1 MGVSVNGIEIPDAAIEQELPHHQHAGNPLKQSVHELVLRTVLLHEADRLGIAGAGDDGRI 60 Query: 61 EALLQREVHAPLPDEEECRRHYQAAPDRFRVGALAEVSHILFQVTEGVDLAALRLHAESV 120 EAL +EV P DE C Y+ P RF G L E HILFQVT V L LR E+V Sbjct: 61 EALFAQEVRVPDADEAACATFYRNQPQRFTSGELVEARHILFQVTPSVPLELLRETGEAV 120 Query: 121 LAESLAQPQRFAELAVINSNCPSGAQGGSLGQITRGACVPEFEKAVFAAQAGAILPRLVE 180 LAE P+RFAELA SNC SG GG+LGQ+TRG VPEFE VF G + RL+E Sbjct: 121 LAELRVHPERFAELAREYSNCASGTVGGNLGQLTRGQTVPEFEALVFRLPEGELADRLLE 180 Query: 181 SRFGLHIVQLGRKFDGQALPFEAVRENIAQALQRASFDRAVRQYLQLLVGRARISGIDLP 240 +RFGLHIVQ+ R+ G+ +P EAV+ IA L R ++ RAV QYLQ+LVGRA I G+ L Sbjct: 181 TRFGLHIVQVLRRVAGEVVPLEAVKAQIADHLSRQAWQRAVHQYLQILVGRADIQGVTLE 240 Query: 241 GTGTPLVQ 248 G T LVQ Sbjct: 241 GAETQLVQ 248 >gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Herminiimonas arsenicoxydans] Length = 469 Score = 57.4 bits (137), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 4/138 (2%) Query: 98 SHILFQVTEGVDLAALRLHAESVLAESLAQPQRFAELAVINSNCPSGAQGGSLGQITRGA 157 SHIL +V + V A R + + F ELA ++SN S ++GG LG I G Sbjct: 328 SHILIKVNQVVSAADARRKLTELKQRLDNKAATFEELARLHSNDFSASKGGDLGWIYPGD 387 Query: 158 CVPEFEKAVFAAQAGAILPRLVESRFGLHIVQLG-RKFDGQALPFEAVRENIAQALQRAS 216 VPEFE+A+ A G + +ES FG H++ + RK D + E R + QAL+ Sbjct: 388 TVPEFERAMDALPVGEV-SEPIESPFGYHLILVKERKSDD--VSQERQRLVVRQALRAQK 444 Query: 217 FDRAVRQYLQLLVGRARI 234 + A + +L+ + RA + Sbjct: 445 VEEATQDWLRQVRDRAYV 462 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 367,780 Number of extensions: 13103 Number of successful extensions: 54 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 53 Number of HSP's successfully gapped: 4 Length of query: 248 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 169 Effective length of database: 740,042 Effective search space: 125067098 Effective search space used: 125067098 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)