BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3559.p
         (227 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094866|ref|YP_001099941.1| nitrate reductase 1, cytochrome...   300   4e-83

>gi|134094866|ref|YP_001099941.1| nitrate reductase 1, cytochrome
           b(NR) subunit gamma [Herminiimonas arsenicoxydans]
          Length = 227

 Score =  300 bits (768), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/227 (72%), Positives = 194/227 (85%)

Query: 1   MNYLHQFLYGIYPYIALVVFLLGSLVRFEREQYTWKSDSSQLLHAGRLRLGNLLFHVGVL 60
           M+YLHQF++GIYPYIAL +FLLGSL+RF+REQYTWKS+SSQLL+ G LR GN+LFHVG+L
Sbjct: 1   MSYLHQFIFGIYPYIALAIFLLGSLIRFDREQYTWKSESSQLLYRGSLRTGNILFHVGIL 60

Query: 61  GLFFGHLVGLLTPVAVWDAIGVTHSFKQAVAMLAGGVFGTLCLLGLLILIHRRWTDARIA 120
           GLFFGH VGLLTPV VWDA+G+THS KQ VAM+AGGV G LCL+G+LIL+ RR+   R+ 
Sbjct: 61  GLFFGHAVGLLTPVWVWDALGITHSLKQIVAMVAGGVMGGLCLIGILILLARRFASDRLR 120

Query: 121 AVTRPSDKLLLLWLLVTLGLGLSTIAESAQHRDGHMMVLLMTWAQHIITLRGDAASFIEA 180
           AVT   DK++LLW+L TL LGL +I  SA H DGH+MV LM WAQHI+TLRG AA FI  
Sbjct: 121 AVTTFKDKIVLLWILATLLLGLFSIYASASHTDGHVMVQLMNWAQHILTLRGGAAQFIAD 180

Query: 181 APLLFKLHLFMGLTLFVIFPFTRLVHVWSGFASVTYLGRAWQLVRPR 227
           APL+FKLHLFMG++LFVIFPFTRLVHVWSGF +VTYLGRA+QLVR R
Sbjct: 181 APLIFKLHLFMGMSLFVIFPFTRLVHVWSGFGTVTYLGRAFQLVRRR 227


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.145    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 329,133
Number of extensions: 9501
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 148
Effective length of database: 740,042
Effective search space: 109526216
Effective search space used: 109526216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 127 (53.5 bits)