BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3558.p
         (231 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094867|ref|YP_001099942.1| respiratory nitrate reductase s...   236   6e-64

>gi|134094867|ref|YP_001099942.1| respiratory nitrate reductase
           subunit delta [Herminiimonas arsenicoxydans]
          Length = 220

 Score =  236 bits (603), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 154/215 (71%)

Query: 13  KLYRILSALMSYPQADLIAALPEIGLAVQAEPTHRSALQPLLDHLAGTPLIDLQEAYVDT 72
           K Y++LSAL+ YP+  L+  L E+   +   P  + ALQPL  +LA   LI+LQ+ YV T
Sbjct: 2   KHYQVLSALLLYPEQSLLDNLDELDAILAYTPELQPALQPLFAYLAQEKLIELQQNYVAT 61

Query: 73  FDRSHALSLHLFEHIHGESRDRGQAMVDLLEEYRAHGMEPAANELPDYVPLFLEFLSLLE 132
           FDR+ + SLHLFEHIHGESRDRGQAMVDL+EEY+ HG++   ++LPDYVPLFLEFLS LE
Sbjct: 62  FDRTPSHSLHLFEHIHGESRDRGQAMVDLMEEYKKHGLQMGGDDLPDYVPLFLEFLSQLE 121

Query: 133 PAAAEKLLGEAIHVLAAIGLRLQKREHPYSSLFLLLTTLTEVEPREQDEPPVRDMDEAME 192
              A  +L +AIHVLA IG +L     PY+ +F +L +L+ V   E  EPPVRDMDEA+E
Sbjct: 122 EEQALNMLADAIHVLACIGRKLAAGGSPYAGIFAVLESLSPVAAEELSEPPVRDMDEALE 181

Query: 193 VFGPGADGVEPLLKPAMGGVQPLHFHPRPAARPAS 227
            FGP ADGVEPLLK   GG QP++F+P+  ARP +
Sbjct: 182 TFGPSADGVEPLLKTFAGGPQPVNFYPKATARPTA 216


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 434,468
Number of extensions: 17014
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 152
Effective length of database: 740,042
Effective search space: 112486384
Effective search space used: 112486384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)