BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3557.p
         (517 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094868|ref|YP_001099943.1| nitrate reductase 1, Fe-S (beta...   927   0.0  
gi|134096493|ref|YP_001101568.1| putative Iron-sulfur cluster-bi...    82   8e-17

>gi|134094868|ref|YP_001099943.1| nitrate reductase 1, Fe-S (beta)
           subunit [Herminiimonas arsenicoxydans]
          Length = 518

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/512 (82%), Positives = 471/512 (91%)

Query: 1   MRIRAQVGMVLNLDKCIGCHTCSVTCKNVWTSRDGVEYAWFNNVETKPGIGYPKQWENQK 60
           M+IRAQ+GMVLNLDKCIGCHTCSVTCKNVWTSRDGVEYAWFNNVETKPGIGYPK+WENQ 
Sbjct: 1   MKIRAQIGMVLNLDKCIGCHTCSVTCKNVWTSRDGVEYAWFNNVETKPGIGYPKEWENQD 60

Query: 61  KWNGGWLRNASGKLEPKQGGRVRILTNLFANPNLPAIDDYYEPFTYDYEHLQKAPLMATP 120
           KWNGGW R ASGK+EP+QG R++IL N+FANPN+PA+D+YYEPFTYDYE LQ APL  TP
Sbjct: 61  KWNGGWKRTASGKIEPRQGSRLKILANIFANPNMPALDEYYEPFTYDYERLQNAPLSETP 120

Query: 121 PTARPVSVLTGKKMDKITWGPNWEDDLGGEFSARSKDALFEGVQKEMHSTFESTFMMYLP 180
           PTARP+SV+TGKKMDKI WGPNWEDDLGGEF+ RSKD LF+ +QKEM+ TFE+TFMMYLP
Sbjct: 121 PTARPISVITGKKMDKIEWGPNWEDDLGGEFAKRSKDKLFDNMQKEMYGTFENTFMMYLP 180

Query: 181 RLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYYNWSSGKA 240
           RLCEHCLNP CVASCPSGS+YKRE+DGIVL+DQDKCRGWRMCISGCPYKKIYYNWSSGKA
Sbjct: 181 RLCEHCLNPTCVASCPSGSVYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYNWSSGKA 240

Query: 241 EKCTFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADKIEAAASVADEQNLYQAQLDCFL 300
           EKCTFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADKIEAAASV DEQ+LY+AQL  FL
Sbjct: 241 EKCTFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADKIEAAASVPDEQDLYEAQLGVFL 300

Query: 301 DPHDPAVIAEARRQGIAESWLESARRSPVYKMALQWKIAFPLHPEYRTLPMVWYVPPLSP 360
           +PHDPA+I EARRQGI +SWLESA +SPVYKMA++WK+AFPLHPEYRTLPMVWY+PPLSP
Sbjct: 301 NPHDPAIIEEARRQGIPDSWLESAAKSPVYKMAMEWKVAFPLHPEYRTLPMVWYIPPLSP 360

Query: 361 IQKAAEAGHMGMTGIIPDVKSLRIPVRYLANLLTAGKEAPILSALERLLAMRAYKRAETV 420
           IQ AAE+G MG+ GIIPD +SLRIPV+YLANLLTAGKEAP++ AL+R+LAMRAY R++TV
Sbjct: 361 IQAAAESGKMGLNGIIPDTRSLRIPVKYLANLLTAGKEAPVVHALDRMLAMRAYMRSKTV 420

Query: 421 HGQKDEAVLQQVGLTPAEVEDMYQTLAIANYEDRFVVPSSHKEMVEDSFNDKGSCGFTFG 480
             + +  VL+QVGLT AEVEDMY  +AIANYEDRFV+P+SHKEM EDSFN+KGSCGF+FG
Sbjct: 421 DKEVNLTVLKQVGLTQAEVEDMYHIMAIANYEDRFVIPASHKEMAEDSFNEKGSCGFSFG 480

Query: 481 NGCSGGVSDGSLFGKKPQGSVIFVDMPKSRKK 512
           NGCS GVSD SLFGKK QGS IFV MPKSRKK
Sbjct: 481 NGCSDGVSDASLFGKKKQGSAIFVSMPKSRKK 512


>gi|134096493|ref|YP_001101568.1| putative Iron-sulfur
           cluster-binding protein (partial) [Herminiimonas
           arsenicoxydans]
          Length = 243

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 158 ALFEGVQKEMHSTFESTFMMYLPRLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCR 217
             F  VQ      F +T  ++ P+ C HC  P CV  CP+G+ YKRE DG+VLVD DKC 
Sbjct: 48  TFFNRVQTYEVGRFPATDTVHFPKSCLHCEEPPCVPVCPTGASYKRESDGLVLVDYDKCI 107

Query: 218 GWRMCISGCPYKKIYYNWSSGKAEKCTFCYPRIEAGQ--PTVCSETCVGRIRYLGVLLYD 275
           G   C   CPY     +    +  KCT C  RI+     P      CV        L  D
Sbjct: 108 GCNYCAWACPYGARELDEHRQEMSKCTLCADRIDNPSLPPQDRQPACVMACPTSARLFGD 167

Query: 276 ADKIEAAASVA-DEQNLYQ 293
               E+  SVA  EQ  YQ
Sbjct: 168 IHDPESIVSVAIREQGGYQ 186


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,057,408
Number of extensions: 45336
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 517
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 431
Effective length of database: 716,977
Effective search space: 309017087
Effective search space used: 309017087
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)