BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3556.p (1242 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094869|ref|YP_001099944.1| nitrate reductase 1 subunit alp... 2060 0.0 >gi|134094869|ref|YP_001099944.1| nitrate reductase 1 subunit alpha [Herminiimonas arsenicoxydans] Length = 1242 Score = 2060 bits (5338), Expect = 0.0, Method: Compositional matrix adjust. Identities = 966/1239 (77%), Positives = 1073/1239 (86%), Gaps = 11/1239 (0%) Query: 1 MSHFLDRLKFMSRVKSTFADGHGAVVNEDRQWENAYRSRWQHDKEVRSTHGVNCTGSCSW 60 MSHFLDRLKF ++ + +F++GHG VV+EDR WE +YR RWQHDK VRSTHGVNCTGSCSW Sbjct: 1 MSHFLDRLKFFNKPQESFSNGHGTVVDEDRSWEKSYRQRWQHDKIVRSTHGVNCTGSCSW 60 Query: 61 KVYVKNGLITWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYVYSAQRVKYPMIRGRLMQ 120 KVYVKNGLITWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYVYSAQRVKYPM+RGRLM+ Sbjct: 61 KVYVKNGLITWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYVYSAQRVKYPMVRGRLME 120 Query: 121 LWQEARRTLSPVEAWAAITSDAAKATSYKSVRGLGGFVRADWDTANEIIAAANAYTIKQY 180 +W+ AR +SPV AW I+ + +A YKSVRG GGFVRA WD NEIIAAANAYT+K++ Sbjct: 121 MWRAARVLMSPVAAWEYISQNPERAQQYKSVRGQGGFVRAKWDEVNEIIAAANAYTVKKF 180 Query: 181 GPDRVIGFSPIPAMSMVSYAAGARYLSLIGGVPLSFYDWYCDLPPASPQIWGEQTDVPES 240 GPDR+IGFSPIPAMSMVSYAAG RYLSLIGGV LSFYDWYCDLPPASPQ+WGEQTDVPES Sbjct: 181 GPDRIIGFSPIPAMSMVSYAAGTRYLSLIGGVALSFYDWYCDLPPASPQVWGEQTDVPES 240 Query: 241 ADWYNSTYLMVWGSNVPQTRTPDAHFYTEVRYKGTKTVAVSSDFGEMVKFGDIWLAPKQG 300 ADWYNSTYLMVWGSNVP TRTPDAHFYTEVRYKGTKTVAVSSDFGEM KFGDIWLAPKQG Sbjct: 241 ADWYNSTYLMVWGSNVPMTRTPDAHFYTEVRYKGTKTVAVSSDFGEMAKFGDIWLAPKQG 300 Query: 301 TDAALAMAMGHVVLKEFHQAQPSAYFRSYVKQYTDMPMLVRLVQRDGHYLPDHLLRASQL 360 TDAALAMAMGHV+LKE+H + SAYFRSY KQYTD PMLV L +++G +PD+ LRAS L Sbjct: 301 TDAALAMAMGHVILKEYHASGKSAYFRSYAKQYTDFPMLVLLKEKNGTLVPDYFLRASHL 360 Query: 361 PDQLEEANNADWKSLAIDASTGQIVAPNGSIGYRWGEGQVNDGAKVGRWNLESRDGHSGR 420 + L+E NN DWK+L ID ++G I AP GSIG+RWGE G+WNLE + G SG+ Sbjct: 361 ANNLDETNNPDWKTLVIDETSGDISAPAGSIGFRWGE--------FGKWNLEQKAGTSGK 412 Query: 421 EIDPLLSLVAQHDEVVTVAFNYFGGDDAQPLALRQVPVRHVRLADGSTALVATVHDLMMA 480 IDPLLSL+ DEV V F YFGG DA+ + LR +PV+ ++LADGS A VATV+DL MA Sbjct: 413 PIDPLLSLIDCSDEVTAVGFPYFGGKDAEDMLLRNIPVKKIQLADGSIATVATVYDLTMA 472 Query: 481 NYGVDQGLGG-EIARSYDDDVPYTPAWQEKHTGVKRELVIQVAREFAQNAHDTQGKSMVI 539 NYGVD+GLGG +A+ DDDVPYTPAWQ KHTGVK VI VAREFA NA T+GKSMVI Sbjct: 473 NYGVDRGLGGGNVAKDLDDDVPYTPAWQVKHTGVKAADVITVAREFADNADKTKGKSMVI 532 Query: 540 VGAALNHWYHNDMIYRGIINLLMMCGCIGKSGGGWAHYVGQEKLRPQFGWAPLAFATDWV 599 VGAALNHWYH DM YRGIIN+LMMCGC+G+SGGGWAHYVGQEKLRPQ GW PLAFA DW Sbjct: 533 VGAALNHWYHMDMTYRGIINMLMMCGCVGQSGGGWAHYVGQEKLRPQTGWTPLAFALDWN 592 Query: 600 RPPRQMNGTSFFYAHTSQWRHEKLGIDEIVAPTADKDKLSSMSMIDMNAKSERMGWLPSA 659 RP RQMNGTSFFYAHTSQWRHEKL +EI +P+AD + ++ MS++D NAK+ERMGWLPSA Sbjct: 593 RPMRQMNGTSFFYAHTSQWRHEKLHTEEIQSPSADSN-VAQMSLLDYNAKAERMGWLPSA 651 Query: 660 PQLETNPLDICDNARAMGQTPQDYLKEALKSGTVNMSCDDPDNPKNFPRNMFVWRSNILG 719 PQLETNPL++ A A GQ Q Y + +K+G +N SCDDPDNP NFPRNMFVWRSNILG Sbjct: 652 PQLETNPLEVTRAAEAAGQDVQQYAVDQIKAGKLNFSCDDPDNPANFPRNMFVWRSNILG 711 Query: 720 SSGKGHEYFLKYLLGTQNALFDNPDEAIKPSEVKYREQAAEGKLDLLVTLDFRMSTTCLY 779 SSGKGHEYFLKYLLGTQNAL + D IKP +VK R AAEGKLDLLV LDFRMSTTCLY Sbjct: 712 SSGKGHEYFLKYLLGTQNALMSDEDSCIKPRDVKVRP-AAEGKLDLLVVLDFRMSTTCLY 770 Query: 780 ADIVLPTATWYEKDDLNTSDMHPFIHPLSEAVQPLWESKTDWEIYKGIAKKFSEIGGDYL 839 DIVLPTATWYEKDDLNTSDMHPFIHPLSEAVQPLW+SKTDWEIYKGIA+KFSEIGG+YL Sbjct: 771 GDIVLPTATWYEKDDLNTSDMHPFIHPLSEAVQPLWQSKTDWEIYKGIAEKFSEIGGEYL 830 Query: 840 GTRSDIVLQPLMHDTPAELGQPFEPKDWKKGECDLIPGKTAPNFVVVERNYKDIYKKFTS 899 GT+ D+VL PLMHDTP ELGQPF+PKDW+ GEC+ IPGKT PNF VVERNY+DIYKKFTS Sbjct: 831 GTQKDLVLTPLMHDTPGELGQPFDPKDWRAGECEPIPGKTMPNFTVVERNYRDIYKKFTS 890 Query: 900 IGPLLDKLGNGGKGINWQTGHEVGELAALNKRVTEPGVSQGRPRLDSAIDACEMILSFAP 959 +GPLL+ LGNGGKGI W+TGHEV L +N+ V E GVS+G+PRLD+AIDA EMILS AP Sbjct: 891 VGPLLESLGNGGKGIGWKTGHEVEVLRGINRTVLEEGVSKGQPRLDTAIDAAEMILSLAP 950 Query: 960 ETNGHVAVKAWEALGKITGRDHTHLAVGREHDKIRFRDVQAQPRKIISAPTWSGLESEEV 1019 ETNGHVAVKAW+AL K+TGRDHTHLA+ REHD IRFRDVQAQPRKIIS+PTWSGLESEEV Sbjct: 951 ETNGHVAVKAWDALSKMTGRDHTHLALPREHDTIRFRDVQAQPRKIISSPTWSGLESEEV 1010 Query: 1020 SYNAGYTNVHELIPWRTLTGRQQFYQDHRWMLDFGEGLCVYKPAVDTKTVAPMLNRQPNG 1079 SYNAGYTNVHE+IPWRTLTGRQQFYQDH WM DFGEGLCVYKPA++TKT A ML QPNG Sbjct: 1011 SYNAGYTNVHEMIPWRTLTGRQQFYQDHLWMRDFGEGLCVYKPAINTKTTAAMLGAQPNG 1070 Query: 1080 EKEIVLNFLTPHQKWGIHSTYSDNLRMLTLSRGGPHVWISEDDAKAAGLVDNDWVEVFNS 1139 KEI LNF+TPHQKWGIHSTYSDNLRMLTLSRGGPHVW+SE DAK AG+VDNDW+EVFN Sbjct: 1071 NKEIALNFITPHQKWGIHSTYSDNLRMLTLSRGGPHVWLSETDAKNAGIVDNDWIEVFNV 1130 Query: 1140 NGTLTARVVVSQRIPGGMCLMYHAQEKIVNTPGAQLSGKRGGIHNSVTRAVLKPTHMIGG 1199 NGTLTAR VVSQR+P GM LMYHAQEKI+N PGA++SGKRGGIHNSVTRAV KPTHMIGG Sbjct: 1131 NGTLTARAVVSQRVPAGMTLMYHAQEKIINVPGAEMSGKRGGIHNSVTRAVTKPTHMIGG 1190 Query: 1200 YAQLSYGFNYYGTVGSNRDEFIVLRKMNKVDWLDGRKQE 1238 YAQLSYGFNYYGTVGSNRDEF+++RKM KVDWL+G +E Sbjct: 1191 YAQLSYGFNYYGTVGSNRDEFVLVRKMKKVDWLEGPLEE 1229 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 2,626,781 Number of extensions: 115928 Number of successful extensions: 291 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 288 Number of HSP's successfully gapped: 1 Length of query: 1242 Length of database: 1,000,347 Length adjustment: 93 Effective length of query: 1149 Effective length of database: 693,912 Effective search space: 797304888 Effective search space used: 797304888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)