BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3552.p
         (292 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095811|ref|YP_001100886.1| hypothetical protein HEAR2643 [...   412   e-117

>gi|134095811|ref|YP_001100886.1| hypothetical protein HEAR2643
           [Herminiimonas arsenicoxydans]
          Length = 286

 Score =  412 bits (1060), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/292 (70%), Positives = 244/292 (83%), Gaps = 6/292 (2%)

Query: 1   MKWEGNRESDNVEDRRGEEGGGGGGFGFGGRSIGLGTVAVALVASYFLGINPLTMLNLLS 60
           MKWEGNRESDNVEDRRG  GG GG      RSIG+GT+ +AL+ SYFLGINP T+++LLS
Sbjct: 1   MKWEGNRESDNVEDRRGSGGGFGG------RSIGIGTIVIALLGSYFLGINPATIISLLS 54

Query: 61  GGGAPAPVQQAPAHKPSPNDQMARFVSTVLADTEDTWGQIFANNGKQYVRPKLVLFSGST 120
           GGG      Q PA  P  ND MARFV+TVLADTEDTWG IF  +G  Y++PKLVLF+G T
Sbjct: 55  GGGPVQMQSQEPAQGPPANDPMARFVATVLADTEDTWGPIFRASGANYIKPKLVLFTGQT 114

Query: 121 PTACGTGQTATGPFYCPGDQKVYIDLSFYELMKQRFKVSGNFAQAYVIAHEVGHHVQHLM 180
           PTACGTG TA+GPFYCPGDQK+YIDL+FY+ M+ RF+VS +FAQAYVIAHEVGHHVQH+ 
Sbjct: 115 PTACGTGDTASGPFYCPGDQKIYIDLAFYQTMRDRFRVSSDFAQAYVIAHEVGHHVQHIS 174

Query: 181 GISDKVDAARRNATEKQANAMSVRLELQADCFAGVWAYHANQARHILEEGDIEDALHAAS 240
           GI++KV+ ARR  T+KQANA+SV+LELQADCFAGVWAYHANQAR ILE+GD+E AL AAS
Sbjct: 175 GITEKVEQARRGGTQKQANAISVKLELQADCFAGVWAYHANQARSILEDGDVESALKAAS 234

Query: 241 AIGDDALQRQARGVVVPDSFTHGSSAQRVTWFKRGIAAGKVSACNTFATKEL 292
           AIGDD LQ+QA+G VVPDSFTHG+SAQRV WF+RGI  G +++CNTFA ++L
Sbjct: 235 AIGDDTLQKQAQGHVVPDSFTHGTSAQRVRWFQRGIDGGDLNSCNTFAARQL 286


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 503,858
Number of extensions: 18662
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 211
Effective length of database: 733,452
Effective search space: 154758372
Effective search space used: 154758372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)