BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3547.p
         (478 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093838|ref|YP_001098913.1| exonuclease I [Herminiimonas ar...   708   0.0  

>gi|134093838|ref|YP_001098913.1| exonuclease I [Herminiimonas
           arsenicoxydans]
          Length = 477

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/475 (69%), Positives = 384/475 (80%), Gaps = 1/475 (0%)

Query: 1   MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGEAIMIYCKPAPDYLPDPISCL 60
           MS HTFLWHDYETFG   RRDRPAQFAA+RTDAELNEIG  IM+YC+PA D+LPDP SCL
Sbjct: 1   MSTHTFLWHDYETFGINTRRDRPAQFAAIRTDAELNEIGAPIMLYCQPANDFLPDPQSCL 60

Query: 61  ITGITPQHCLQHGLPEHEFAARIEQTLGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120
           ITGITPQ CL+ G+PE++FAA+IE  L + GTIGVGYNTIRFDDEVTRFMFWRNLIDPYA
Sbjct: 61  ITGITPQVCLERGIPEYQFAAKIESELAQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120

Query: 121 REWANGCGRWDLLDVVRLTYALRPQGITWPKKEDGSVSFKLEDLSKANGLVHEAAHDALS 180
           REW N CGRWD+LDVVR  YALRP+GI WP+  DG  SF+LE L+ ANG+ HEAAHDALS
Sbjct: 121 REWQNACGRWDILDVVRTAYALRPEGINWPQHPDGRSSFRLEQLTAANGIAHEAAHDALS 180

Query: 181 DVRATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPVAKPFLHVSGMFPVANGCLAL 240
           DVRATIALARLIR   PRLFDF  ALHKKD+ A EIGLP+ +PFLH++GMFP   GC+ +
Sbjct: 181 DVRATIALARLIRDRQPRLFDFCFALHKKDRVATEIGLPLRRPFLHITGMFPAERGCIGI 240

Query: 241 MWPLGMHPTNKNEVIAWDLGYDPSELAGLDAAAVRQRMFTKRDELPEGMTRLPIKSIHLN 300
           +WPL +HPTNKNEVI WDL  DPSELA LDA  +R RMF+K D LPEG++RLPIKSIHLN
Sbjct: 241 VWPLAVHPTNKNEVIVWDLAADPSELATLDAETIRTRMFSKADALPEGVSRLPIKSIHLN 300

Query: 301 KSPMVVGNLKTLTTERAAELNIDVQAALRHADLAAALPDLAPLWRQVYQRDSEAAADVDE 360
           KSP+V+ NLKTL+ E  A+  +DV  ALRHA++AA  PD+  +W+ V+ R  E   DVDE
Sbjct: 301 KSPVVINNLKTLSAEMTAQWGLDVATALRHAEIAATTPDMTAIWQDVFHRPQEGTPDVDE 360

Query: 361 DLYGGFIGNGDRRQLTQLRALPPQALATASVAFDDMRLNEVLFRYRARNFPQTLSPDEAQ 420
           DLYGGF+GN DRR L +LRAL P+ALA A+  F D RL E+ +RYRARNFPQTLS +EA+
Sbjct: 361 DLYGGFVGNNDRRLLQELRALSPEALAKATPGFSDARLEELFWRYRARNFPQTLSAEEAE 420

Query: 421 HWEEHRAARLFEGAGGARTIAQLFEQIDQLQEESDDERTQDILGALYDYAEMIAP 475
            WEEHRAARLF G GGARTI  +F +IDQL E + DER ++IL ALYDYAE IAP
Sbjct: 421 RWEEHRAARLFNGDGGARTIEGMFAEIDQLSETA-DERGEEILAALYDYAEAIAP 474


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 902,051
Number of extensions: 36784
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 393
Effective length of database: 720,272
Effective search space: 283066896
Effective search space used: 283066896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)