BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3544.p
         (100 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093357|ref|YP_001098432.1| extracellular polysaccharide bi...   156   2e-40

>gi|134093357|ref|YP_001098432.1| extracellular polysaccharide
           biosynthesis protein [Herminiimonas arsenicoxydans]
          Length = 100

 Score =  156 bits (394), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 81/100 (81%)

Query: 1   MILELADIRIQPGKQAEFDEAIQRGLAQTISKARGYLGHKVQKGIESPERYLLMVYWATL 60
           MILEL DIRIQPGKQ EFD A+QRGL Q I+KA+GY  H + K IE+PERY++ +YW TL
Sbjct: 1   MILELVDIRIQPGKQTEFDAAVQRGLEQVIAKAKGYKQHVINKCIETPERYVIQIYWETL 60

Query: 61  ENHTVDFRESPAFTEWRGIVGPFFAGAPQVEHFALLTESA 100
           ENHTVDFRESPAF EWR IVGP+FA  P VEHF  L++SA
Sbjct: 61  ENHTVDFRESPAFQEWRAIVGPYFAAPPTVEHFNPLSKSA 100


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 191,341
Number of extensions: 6547
Number of successful extensions: 15
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 1,000,347
Length adjustment: 68
Effective length of query: 32
Effective length of database: 776,287
Effective search space: 24841184
Effective search space used: 24841184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 121 (51.2 bits)