BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3541.p
         (337 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095728|ref|YP_001100803.1| putative inorganic ion transpor...   123   1e-29

>gi|134095728|ref|YP_001100803.1| putative inorganic ion transport
           and metabolism [Herminiimonas arsenicoxydans]
          Length = 274

 Score =  123 bits (309), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 133/267 (49%)

Query: 65  LEHHSDIAEYITEFLLSSDTHPGLHATPDGVYGTLTDMKMEIGDTGTEKGALHFYLDRTR 124
           +  H+ +A    E L        +    D +   + D+         +   L   + +  
Sbjct: 1   MSEHAHVAAEFNEALHDGSRSTRIELADDTLIAVVNDVLHNFSLDSADTATLWLSVTQHV 60

Query: 125 LLTLRTQPLISTNMLRQKVLDGGDFDNPMDLFAELLRCLADGFNARLDKLNDKVDDIEFS 184
           +++ R  PL S   LRQ V  G    + ++L   LLR  AD     +     +VD +E +
Sbjct: 61  VISARRTPLKSIERLRQAVERGDAIRSSVELLVHLLRDQADVLVRIVRDAVARVDQVEDN 120

Query: 185 VLSDRRAEDRAELSSIRRQLAELRRFIAPERRILAQFQRLRPSWVPREALEDLTHALDEL 244
           +L+ R  + R +L ++RR L  L+R +APE   L +  +  P WV     ++L  + +E 
Sbjct: 121 LLAGRLNKQRTDLGALRRILVRLQRLLAPEPAALFRLLQKPPGWVAELDTQELRQSTEEF 180

Query: 245 NELHSTVEAVYERAKLLQEEIASQMSEQMNRNLMALSILTALLMPATLVSGIFGMNVAGL 304
           + + S + ++ ER KLLQEEIA+Q++E+ +R+L  L+I+T L +P  +++G+ GMNV G+
Sbjct: 181 SVVLSDMSSLQERIKLLQEEIAAQVNEENSRSLYVLTIVTVLALPINIIAGLLGMNVGGV 240

Query: 305 PGLHDEASFWIVMGVMGGLGVATVAFL 331
           P       FWIV G++    V    F+
Sbjct: 241 PLADHTYGFWIVAGIVATFTVVAGWFV 267


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 660,590
Number of extensions: 25956
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 255
Effective length of database: 730,157
Effective search space: 186190035
Effective search space used: 186190035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)