BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3539.p
         (583 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093864|ref|YP_001098939.1| glutaminyl-tRNA synthetase [Her...   907   0.0  
gi|134094216|ref|YP_001099291.1| glutamyl-tRNA synthetase [Hermi...    62   7e-11

>gi|134093864|ref|YP_001098939.1| glutaminyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 582

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/585 (74%), Positives = 491/585 (83%), Gaps = 5/585 (0%)

Query: 1   MSNELKNGHT-PAP-STNFLRGIIESDLVSGTYAERSNQDGEALPQVVTRFPPEPNGYLH 58
           MSN+ KNG T P P S+NFLRGIIE+DL +G + +R ++DG+ LP V+TRFPPEPNGYLH
Sbjct: 1   MSNDTKNGSTNPTPASSNFLRGIIEADLAAGKHEKRVDKDGQPLPTVITRFPPEPNGYLH 60

Query: 59  IGHAKSICLNFGLAADYAGRCHMRFDDTNPEKEEQEYVDTILDSVKWLGFSWEHEGKSHL 118
           IGHAKSICLNFGLA DYAGRC++RFDDTNP KEEQEYVDTI+DSVKWLGF W    K HL
Sbjct: 61  IGHAKSICLNFGLARDYAGRCNLRFDDTNPTKEEQEYVDTIIDSVKWLGFDWHVGDKEHL 120

Query: 119 YYASNYFDVMYACAQALIRKGLAYVDEQNAEQMRENRGTLTEAGKDSPWRDRPAEESLRL 178
           Y+AS+YFD +YA A+ LI  G AYVD Q+A+ M +NRG   EAGK+SP+RDRPA ESL L
Sbjct: 121 YFASDYFDQLYAMAEYLITAGHAYVDSQSADDMAKNRGNFGEAGKNSPFRDRPAAESLDL 180

Query: 179 FEEMRDGKHPDGSMILRARIDMASPNMNLRDPAIYRIRHATHHNTGDKWRVYPMYTFAHP 238
           F  M+ G+  DG  I+RA+IDMASPNMN+RDPAIYRIRHA HH TGD W VYPMY +AHP
Sbjct: 181 FRRMKAGEFKDGEHIVRAKIDMASPNMNMRDPAIYRIRHAHHHRTGDAWCVYPMYDYAHP 240

Query: 239 IEDALENISHSICTLEFEDQRPFYDWLLEHLAEEGFFKKPLPHQYEFARLNLTYIITSKR 298
           IEDA+ENI+HSICTLEF+D RPFYDW+LE LAE GFF KPLPHQYEFARLNLTY ITSKR
Sbjct: 241 IEDAIENITHSICTLEFQDHRPFYDWVLERLAEGGFFTKPLPHQYEFARLNLTYAITSKR 300

Query: 299 KLRQLVDEKIVSGWDDPRMPTIVGLRRRGYTPEAIRLMCDRTGASKNNSWIDFSVLEGAL 358
           KL QLV+E IV GWDDPRMPTIVG+RRRGYTP +I+L  +R G +K +SWID S LEGAL
Sbjct: 301 KLLQLVEENIVDGWDDPRMPTIVGIRRRGYTPASIQLFAERIGVAKVDSWIDMSTLEGAL 360

Query: 359 REDLDPKAPRAVAVLRPLKLIIDNFPEGVSIDCSAPVYPPAHPEHDTAHRHFPITKELWI 418
           R+DLD KAPRA+AVLRPLKLIIDNFPE  +++C+APV+ P HPE    +R FPI+KELWI
Sbjct: 361 RDDLDDKAPRAIAVLRPLKLIIDNFPEDETVECTAPVH-PHHPER--GNRTFPISKELWI 417

Query: 419 EREDFMEEPTKGYFRLFPGNKVRLRYGYVVECTGCDKDEHGNVIAVHCNYFEDSKSGTEG 478
           E+EDFME P+KGYFRLFPGNKVRLRYGYVVEC G DKD  GN+IAVHC YF DSKSGTEG
Sbjct: 418 EQEDFMEVPSKGYFRLFPGNKVRLRYGYVVECVGADKDADGNIIAVHCTYFPDSKSGTEG 477

Query: 479 SSNYKVKGNLHWVSADHALATEVRLYDRLFSDPHPDAGGKDFLAALNPNSKEVITAYLEP 538
           S+NYKVKGNLHWVSA HAL  EVRLYDRLF+D HPDAGGKDF  ALNPNSKEVITAY+EP
Sbjct: 478 SANYKVKGNLHWVSAAHALEAEVRLYDRLFTDAHPDAGGKDFKLALNPNSKEVITAYVEP 537

Query: 539 TLKNAQPGEIYQFERHGYFVADRVDSTAGQPIFNRAVTLKDSWGK 583
            +   Q  E  QFERHGYFVADRVDS AG+P+FNR VTLKDSWGK
Sbjct: 538 GVSAVQADEKLQFERHGYFVADRVDSKAGKPVFNRVVTLKDSWGK 582


>gi|134094216|ref|YP_001099291.1| glutamyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 467

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 8/128 (6%)

Query: 45  VVTRFPPEPNGYLHIGHAKSICLNFGLAADYAGRCHMRFDDTNPEKEEQEYVDTILDSVK 104
           + TRF P P GYLH+G A++   ++  A  + G   +R +DT+ E+   E V  I++ ++
Sbjct: 7   IRTRFAPSPTGYLHVGGARTALFSWAYARHFGGTFVLRIEDTDLERSTPEAVQAIIEGME 66

Query: 105 WLGFSWEHEGKSHLYYASNYFDVMYACAQALIRKGLAYV---DEQNAEQMRENRGTLTEA 161
           WLG   + EG    +Y     D        ++  G AY      +  E MRE +    E 
Sbjct: 67  WLGLHHD-EGP---FYQMQRMDRYREVIAQMLAAGTAYYCYSSSEEVEAMRERQRAAGEK 122

Query: 162 GK-DSPWR 168
            + D  WR
Sbjct: 123 PRYDGTWR 130


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,241,513
Number of extensions: 54000
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 583
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 496
Effective length of database: 713,682
Effective search space: 353986272
Effective search space used: 353986272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)