BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3535.p
         (247 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093867|ref|YP_001098942.1| glycerophosphodiester phosphodi...   299   1e-82

>gi|134093867|ref|YP_001098942.1| glycerophosphodiester
           phosphodiesterase [Herminiimonas arsenicoxydans]
          Length = 256

 Score =  299 bits (765), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/245 (61%), Positives = 175/245 (71%), Gaps = 4/245 (1%)

Query: 1   MWPYPPILAHRGGGTLAPENTLAAFRTGLEHGYRAVEFDVMLTRDEVPILMHDPQRGRTL 60
           MWPYP I+AHRGGG LAPENT+AA R GL HG+RAVEFDVML RD VP++MHDP  GRT+
Sbjct: 1   MWPYPKIVAHRGGGVLAPENTIAAMRCGLTHGFRAVEFDVMLARDGVPVVMHDPVFGRTV 60

Query: 61  PGAGKIAETDWAELRELEAGAWLDARFAGERICTLEQGLDFCLAHGIWMNVEIKPAAPQY 120
            G G + E    EL   +AG W    F+GE I T EQ   FC+ H IWM++EIKP AP +
Sbjct: 61  AGEGNVNEYTAQELATFDAGVWFGEEFSGEPIPTFEQVASFCMHHAIWMDIEIKP-APGF 119

Query: 121 ARRTAELTAQAVARRFEG---KSGSALPVLSSFSFEALLAAKEAAPALPRGYLVDVMTED 177
             +T  + AQ   R F      S +ALP+LSSFSFEAL AAK AAP +PRG+LVD +  D
Sbjct: 120 EEQTGWVVAQTTRRLFASVPDHSPAALPILSSFSFEALQAAKMAAPEIPRGFLVDDIPPD 179

Query: 178 WQARLAQLQAVALHTNHKHLTPALAAAVKAAGYGLFCYTVNEVARAEEIRLWGVDAFCTD 237
           W  RL  L A+AL TNHK+LTP LA AVK AG+GLFCYTVNE ARA EI  WGVDAFCTD
Sbjct: 180 WHERLLALGAMALMTNHKNLTPLLARAVKDAGFGLFCYTVNEPARATEILSWGVDAFCTD 239

Query: 238 RIDLI 242
           RID+I
Sbjct: 240 RIDVI 244


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 442,445
Number of extensions: 16295
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 168
Effective length of database: 740,042
Effective search space: 124327056
Effective search space used: 124327056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)